Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq9692 114 4e-23 seq22398 113 1e-22 seq23796 86.0 2e-14 seq9809 86.0 2e-14 >seq9692 Length=2189 Score = 114 bits (126), Expect = 4e-23 Identities = 83/96 (86%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 ||||||||||| ||||||||||||||||||||| ||| ||||| | ||| |||||||||| Sbjct 6 CATTTGGCTACTTTAAGAGAGTCATAGTTACTCTCGCTGTTTAACGGCGATTGGTTGAAT 65 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAAT 518 ||| ||| ||| ||||| |||||| ||| || |||| Sbjct 66 TTCATCATTTTTACATTGAGAGCATTGGTCAAAAAT 101 >seq22398 Length=1048 Score = 113 bits (124), Expect = 1e-22 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 ||| |||| ||||| | |||||| | ||| ||| |||| | ||||||||||| ||| Sbjct 116 TTCGTTCCTCGCTGTGTTTGCCAAGATCATTCTCTTCGCTGCGATTTCGCTAGATCATAG 57 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 |||| |||||||||||| ||||||||||||||||||| || || | ||||||||| Sbjct 56 ATAGCGACAGTGGGAATTTCGTTAATCCATTCATGCGAGTTACGACTTAGATGAC 2 >seq23796 Length=988 Score = 86.0 bits (94), Expect = 2e-14 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct 418 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCGTTTCCTTGGCTG 359 >seq9809 Length=2167 Score = 86.0 bits (94), Expect = 2e-14 Identities = 64/75 (85%), Gaps = 5/75 (7%) Strand=Plus/Plus Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 ||| || ||||||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 1276 ATATTTCCTCCCGCCGTTTAGCCGAGCTTGGTTGAATTTCTTCACTT-----TTCAGAGC 1330 Query 506 ACTGGGCAGAAATCA 520 ||||| || |||||| Sbjct 1331 ACTGGACATAAATCA 1345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634456441856