Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20flexuosa_20[genbank_20GCA_5F000951355.1_202014-09-26] 45,472 sequences; 86,175,476 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq18833 161 3e-37 >seq18833 Length=1231 Score = 161 bits (178), Expect = 3e-37 Identities = 166/213 (78%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 46 TTATTGTCACTACCTCCCCGTGTCGGGATTG--GGTAATTTGCGCGCCTGCTGCCTTCCT 103 || || ||||||| ||| | | |||| | |||||||||||| ||||||| |||||| Sbjct 796 TTTTTTTCACTACTTCCTCATTCTGGGAGAGCGGGTAATTTGCGCTCCTGCTGTCTTCCT 737 Query 104 TGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA- 162 |||||||||| ||||||||||| ||| ||||||||||| |||| |||| || ||| || Sbjct 736 TGGATGTGGTTGCCGTTTCTCAAGCTTCCTCTCCGGAACCGAATTCTAACTCTCCGCTAC 677 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||| || |||||| ||||| || ||||||||||||||||||| ||||| || Sbjct 676 CCCATTACAACCATGATAGGCACATAAACTACCATCGAAAGTTGATAAGGCAG----CTG 621 Query 223 AATGAA-CCATCGCCGGCTCAAGGCCATGCGAT 254 ||||| ||||| |||| |||| ||||| ||| Sbjct 620 TATGAACCCATCACCGGTACAAGACCATGTGAT 588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509713190912