Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq20074 140 5e-31 seq1311 134 2e-29 seq434 104 4e-20 >seq20074 Length=502 Score = 140 bits (154), Expect = 5e-31 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| ||||| ||||||||||||||||||||| |||| Sbjct 338 CTAGTTAGCATGCCAGAGTCTCCTTCATTATCAGAATTAACCAGACAAATCACTTTACCA 279 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 |||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 278 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCA 229 >seq1311 Length=16283 Score = 134 bits (148), Expect = 2e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||| || ||| || || ||| ||||||||||||| |||||||||||||||||||||| Sbjct 1273 CTATTAAGTAGGCTAGAGTTTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACCA 1214 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| | |||| ||| |||||| ||||||||| |||||||||| Sbjct 1213 GCTAAGAACGGCCATGTATTACCAGCCACCGAATCATGAAAGAGCTCTCAATCTGTC 1157 >seq434 Length=34476 Score = 104 bits (114), Expect = 4e-20 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||| |||| |||| ||||||||||||||||| ||||||||| |||| |||||||| Sbjct 16193 TCGTTTTTTAT--GAATAAACCAGACAAATCACTCTACCAACTAAAAACGATCATGCACC 16136 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||| ||| |||||| ||||||||| ||||||||| Sbjct 16135 CCCAACCACCGAATCATGAAAGAGCTCTCAATCTGT 16100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796643744283