Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20ochengi_20[genbank_20GCA_5F000950515.2_202016-03-04] 20,243 sequences; 91,660,559 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5538 172 9e-41 seq1134 125 1e-26 seq968 86.0 1e-14 >seq5538 Length=3180 Score = 172 bits (190), Expect = 9e-41 Identities = 137/161 (85%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||||||||| | |||| |||||||| | || || || | |||| |||| ||| Sbjct 2414 GTAAAACTAACCTGTCTGACGACGATCTAAACCAAACTTACATTTCTTATTGGTGG-TGA 2472 Query 102 ACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGG-AAGAGCCGACATCGAAGGA 160 |||||||||||||| | || ||||||||| | |||||| |||| || ||||||||||| Sbjct 2473 ACAATCCAACGCTTGGCAAAGTCTGCTTCGCAACGATAGGGAAGAACCAACATCGAAGGA 2532 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGC-TGCCACAAG 200 ||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 2533 TCAAAAAGCAACGTCGCTATGGACGCTTGGCTTGCCAAAAG 2573 >seq1134 Length=18157 Score = 125 bits (138), Expect = 1e-26 Identities = 80/87 (92%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||| || |||||||||||||||| |||||||||||||||||||||||| |||||| | Sbjct 1917 CAGTAGAGTGAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTTCCTATTGG 1858 Query 95 TGGGTGAACAATCCAACGCTTACCGAA 121 ||||||||||||||||||||| |||| Sbjct 1857 TGGGTGAACAATCCAACGCTTTGCGAA 1831 >seq968 Length=20599 Score = 86.0 bits (94), Expect = 1e-14 Identities = 111/151 (74%), Gaps = 8/151 (5%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCA--ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGT 205 ||| |||||| |||||||||| | || | ||||||| |||||| | |||||| |||| Sbjct 16634 CGATATCGAAAGATCAAAAAGTATAACATAACTATGAATGCTTGGTTATCACAAGTCAGT 16575 Query 206 TATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA----TTTCGAGGGA--CTAAA 259 ||| ||||||||||||| ||| ||||||| || ||| ||| | | | ||| Sbjct 16574 TATTTCTGTGGTAACTTTCCTGACACCTCTTGCTAGAAACCTTCTTCTAATAATTCAAAA 16515 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTA 290 ||||||||||| || |||| ||| |||| Sbjct 16514 GGATCGATAGGGTACGTTTTCGCGGTCTGTA 16484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854227043808