Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq4 149 1e-33 seq3 93.3 7e-17 >seq4 Length=16644688 Score = 149 bits (164), Expect = 1e-33 Identities = 103/117 (88%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || |||||| ||||||||||||| |||||||||||||||||||||| Sbjct 13534803 CTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACCA 13534744 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||| | |||| ||| |||||| ||||||||| |||||||||| Sbjct 13534743 ACTAAGAACGGCCATGTATTACCAGCCACCGAATCATGAAAGAGCTCTCAATCTGTC 13534687 Score = 104 bits (114), Expect = 4e-20 Identities = 81/96 (84%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||| |||| |||| ||||||||||||||||| ||||||||| |||| |||||||| Sbjct 6507224 TCGTTTTTTAT--GAATAAACCAGACAAATCACTCTACCAACTAAAAACGATCATGCACC 6507167 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||| ||| |||||| ||||||||| ||||||||| Sbjct 6507166 CCCAACCACCGAATCATGAAAGAGCTCTCAATCTGT 6507131 >seq3 Length=25485961 Score = 93.3 bits (102), Expect = 7e-17 Identities = 59/63 (94%), Gaps = 1/63 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT-C 75 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| | Sbjct 22354937 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGCCTAC 22354878 Query 76 AAA 78 ||| Sbjct 22354877 AAA 22354875 Score = 89.7 bits (98), Expect = 8e-16 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 10421669 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC- 10421726 Query 77 AACTTC 82 |||||| Sbjct 10421727 AACTTC 10421732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796794797394