Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 7e-18 >seq3 Length=25485961 Score = 96.9 bits (106), Expect = 7e-18 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Plus Query 108 TTTG-AGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACA 166 |||| ||||||||||||||||||||||||||||||||| | |||| |||||||||||||| Sbjct 22354875 TTTGTAGGCAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACGCGCGCTACA 22354934 Query 167 CTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTC 226 ||| || || || | | | ||| | ||| ||||| | ||||| | | ||| || Sbjct 22354935 CTGGAGGAATCAGCGTGCT-GTAACCATTACCGAAAGGTATTGGTAACCCCTTGAAAATC 22354993 Query 227 TGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 |||| | |||| |||||||||||| Sbjct 22354994 CTCCGTGATCGGGA------ATTGCAATTATT 22355019 Score = 89.7 bits (98), Expect = 1e-15 Identities = 61/66 (92%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 |||||| ||| |||||||||||||||||||||||||||||| | |||| ||||||||||| Sbjct 10421732 GAAGTT-GAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGCACGCGCGCT 10421675 Query 164 ACACTG 169 |||||| Sbjct 10421674 ACACTG 10421669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947193615872