Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 349 1e-93 seq2 109 2e-21 >seq1 Length=2816604 Score = 349 bits (386), Expect = 1e-93 Identities = 196/198 (99%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2461818 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 2461877 Query 383 CGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 442 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2461878 CGTTAATCCATTCATGCGCGTCACGAATTAGATGACGAGGCATTTGGCTACCTTAAGAGA 2461937 Query 443 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2461938 GTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTTACATTCAG 2461997 Query 503 AGCACTGGGCAGAAATCA 520 |||||||||||||||||| Sbjct 2461998 AGCACTGGGCAGAAATCA 2462015 Score = 116 bits (128), Expect = 1e-23 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 730322 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCGTTCCCTTGGC 730381 Query 343 TGTGGTTTCGCTAGATAGT 361 ||||||||||||| || || Sbjct 730382 TGTGGTTTCGCTAAATCGT 730400 Score = 91.5 bits (100), Expect = 5e-16 Identities = 83/105 (79%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||| ||||| ||||| |||||| || ||||||||||| | | |||| |||||||| Sbjct 730772 GATAGTATTTAGGGGCAGTGAGAATCTTGTAAATCCATTCATACACATCACAAATTAGAT 730831 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||| || | | |||||||||| ||||||||| |||| Sbjct 730832 AACGAGGGAT-----TGTCATAAGAGAGTCGTAGTTACTCACGCC 730871 >seq2 Length=28345163 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 28312522 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 28312581 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || Sbjct 28312582 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTC 28312631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635188978752