Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Onchocerca_20volvulus_20[genbank_20GCA_5F000499405.2_202014-02-28] 674 sequences; 96,340,582 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2 369 1e-99 seq1 369 1e-99 seq5 131 5e-28 seq4 96.9 1e-17 >seq2 Length=28345163 Score = 369 bits (408), Expect = 1e-99 Identities = 390/504 (77%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 26534328 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 26534386 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26534387 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 26534446 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 26534447 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 26534506 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 26534507 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 26534566 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGA---GCCCCGAAGGGCGT 296 |||| ||||||||| | | || |||| || ||||||| | | || | || Sbjct 26534567 CAAGACCATGCGATCAGCCATAGCTATTCAGAGTCACCAATTAACGGGCCAATAACCCGA 26534626 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGC 355 | | |||| |||||||| || | | | | | ||||||| | ||| |||||||||||| Sbjct 26534627 TTGGTTTTAATCTAATAGATGCGCTCGTCCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 26534686 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| | Sbjct 26534687 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 26534745 Query 414 TTAATGAGCCATTCGCAGTTTCA-CTGTATA-GATTGCTTATACTTAGACATGCATGGCT 471 ||||||||| ||||| |||||| | |||| | || || |||||||||||||||||| Sbjct 26534746 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 26534805 Query 472 TAATCTTTGAGACAAGCATATGAC 495 || ||||||||||||||||| || Sbjct 26534806 TAGCCTTTGAGACAAGCATATAAC 26534829 Score = 365 bits (404), Expect = 1e-98 Identities = 389/504 (77%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 15516265 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 15516323 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15516324 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 15516383 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 15516384 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 15516443 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 15516444 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 15516503 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGA---GCCCCGAAGGGCGT 296 |||| ||||||||| | | || |||| || ||||||| | | || | || Sbjct 15516504 CAAGACCATGCGATCAGCCATAGCTATTCAGAGTCACCAATTAACGGGCCAATAACCCGA 15516563 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGC 355 | | |||| |||||||| || | | | | | ||||||| | ||| |||||||||||| Sbjct 15516564 TTGGTTTTAATCTAATAGATGCGCTCGTCCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 15516623 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| Sbjct 15516624 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTA 15516682 Query 414 TTAATGAGCCATTCGCAGTTTCA-CTGTATA-GATTGCTTATACTTAGACATGCATGGCT 471 ||||||||| ||||| |||||| | |||| | || || |||||||||||||||||| Sbjct 15516683 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 15516742 Query 472 TAATCTTTGAGACAAGCATATGAC 495 || ||||||||||||||||| || Sbjct 15516743 TAGCCTTTGAGACAAGCATATAAC 15516766 Score = 356 bits (394), Expect = 7e-96 Identities = 387/504 (77%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 24209206 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 24209264 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 24209265 CCTCCTTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 24209324 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| || |||||| |||| |||||||||||| ||||||||| Sbjct 24209325 TCTCAGGCTCCCTCTCCGGAGTCAAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 24209384 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 24209385 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 24209444 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGA---GCCCCGAAGGGCGT 296 |||| ||||||||| | | || |||| || ||||||| | | || | || Sbjct 24209445 CAAGACCATGCGATCAGCCATAGCTATTCAGAGTCACCAATTAACGGGCCAATAACCCGA 24209504 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGC 355 | | |||| |||||||| || | | | | | ||||||| | | | |||||||||||| Sbjct 24209505 TTGGTTTTAATCTAATAGATGCGCTCGTCCAAAAGTCGGAGCTCTGGTGCATGTATTAGC 24209564 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| | Sbjct 24209565 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 24209623 Query 414 TTAATGAGCCATTCGCAGTTTCA-CTGTATA-GATTGCTTATACTTAGACATGCATGGCT 471 ||||||||| ||||| |||||| | |||| | || || |||||||||||||||||| Sbjct 24209624 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 24209683 Query 472 TAATCTTTGAGACAAGCATATGAC 495 | ||||||||||||||||| || Sbjct 24209684 CAGCCTTTGAGACAAGCATATAAC 24209707 >seq1 Length=2816604 Score = 369 bits (408), Expect = 1e-99 Identities = 390/504 (77%), Gaps = 11/504 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 1591047 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 1591105 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1591106 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1591165 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 1591166 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 1591225 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 1591226 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 1591285 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGA---GCCCCGAAGGGCGT 296 |||| ||||||||| | | || |||| || ||||||| | | || | || Sbjct 1591286 CAAGACCATGCGATCAGCCATAGCTATTCAGAGTCACCAATTAACGGGCCAATAACCCGA 1591345 Query 297 TGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGC 355 | | |||| |||||||| || | | | | | ||||||| | ||| |||||||||||| Sbjct 1591346 TTGGTTTTAATCTAATAGATGCGCTCGTCCAAAAGTCGGAGCTTTGGTGCATGTATTAGC 1591405 Query 356 TCTAGAATTACCACGGTTATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGAT 413 ||||||||| |||| |||||||| || | ||| || ||||| || | ||| ||| | Sbjct 1591406 TCTAGAATTGCCACAGTTATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGTT 1591464 Query 414 TTAATGAGCCATTCGCAGTTTCA-CTGTATA-GATTGCTTATACTTAGACATGCATGGCT 471 ||||||||| ||||| |||||| | |||| | || || |||||||||||||||||| Sbjct 1591465 ATAATGAGCCGTTCGCGGTTTCACCATTATAGGTTTATTTGAACTTAGACATGCATGGCT 1591524 Query 472 TAATCTTTGAGACAAGCATATGAC 495 || ||||||||||||||||| || Sbjct 1591525 TAGCCTTTGAGACAAGCATATAAC 1591548 >seq5 Length=16048563 Score = 131 bits (144), Expect = 5e-28 Identities = 141/182 (77%), Gaps = 11/182 (6%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 ||| |||||||||||||| |||| |||||||||||||||| |||||| ||||||| || Sbjct 14686231 TGGATAATTTGCGCGCCTACTGCTTTCCTTGGATGTGGTAACCGTTTTTCAGGCTTTCTT 14686172 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC-TATCCTA 193 |||||||||||||||| ||| | ||| || |||||| || ||||| || || Sbjct 14686171 TCCGGAATCGAACCCTTATT-CTCGTAAC-------AACCATGATA-GCCACATAAATTA 14686121 Query 194 CCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGA 253 ||||||||||||||| |||||| | ||| || | || |||| ||| |||||||| Sbjct 14686120 TCATCGAAAGTTGATAAGGCAGACACCTGATAGACCGGTCACCGG-GCAAAACCATGCGA 14686062 Query 254 TT 255 || Sbjct 14686061 TT 14686060 >seq4 Length=16644688 Score = 96.9 bits (106), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 197 TCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTC 256 ||||||||||||| | |||| |||||| || ||||||||| |||| |||||||| Sbjct 7107865 TCGAAAGTTGATAAGACAGACATTTGATAGATACATCGCCGGTGCAAGATCATGCGATCA 7107924 Query 257 GTTAAGTTATTATGAATCACCAAGGAGCC--CCGA-AGGGCGTTGGTTTTTTATCTAATA 313 | || |||| || ||||||| | | || | | || | |||| |||||| | Sbjct 7107925 GCATAGCTATTCAGAGTCACCAATTAACGGGCCAACAACCCGACTGGTTTTAATCTAACA 7107984 Query 314 AATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGT 372 || | | | | | ||||||| | ||| ||||||||||||||||||||| |||| || Sbjct 7107985 GATGCGCTCGTCCAAAAGTCGGAGCTTTGGTGCATGTATTAGCTCTAGAATTGCCACAGT 7108044 Query 373 TATCCATGTAG--TAAGGTACTATCAAATAAACGATAACTGATTTAATGAGC 422 |||||| || | ||| || ||||| || | ||| ||| | | |||||| Sbjct 7108045 TATCCACGTTGGATAATCAAC-ATCAAGTACATTATAGCTGCTATTATGAGC 7108095 Score = 80.6 bits (88), Expect = 8e-13 Identities = 86/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 329 AAGTCGGGGTTTTTA-GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTA-A 386 ||||||| | ||| ||||||||||||||||||||| |||| |||||||| || | | | Sbjct 7281955 AAGTCGGAGCTTTGGTGCATGTATTAGCTCTAGAATTGCCACAGTTATCCACGTTGGATA 7282014 Query 387 GGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 || ||||| || | ||| || | ||||||||| ||||| ||||||| Sbjct 7282015 ATTAACATCAAGTACATTATAGCTATTATAATGAGCCGTTCGCGGTTTCAC 7282065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510389819904