Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1550 205 2e-50 seq324 150 3e-34 seq323 123 5e-26 >seq1550 Length=4416 Score = 205 bits (226), Expect = 2e-50 Identities = 244/326 (75%), Gaps = 9/326 (3%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || ||||| || | ||| Sbjct 3058 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCAGACTTTGTTC 3117 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | ||| || || |||| Sbjct 3118 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCAAGCTTAAC 3176 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 3177 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 3231 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-T 248 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | ||| | Sbjct 3232 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTAGGTAACAC-TGACT 3290 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 |||||||||||||| | |||||||||||| ||||||||| | || | |||||||||| Sbjct 3291 GGAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACTTGTGGCTGGGGGTGAAAG 3350 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||| |||| |||||| || Sbjct 3351 GCCAATCAAACCGGGAGATAGCTGGT 3376 >seq324 Length=1027 Score = 150 bits (166), Expect = 3e-34 Identities = 229/324 (71%), Gaps = 9/324 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| || |||||| | | Sbjct 907 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTAGGAGCCC---GCAAGG 851 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || ||||||| Sbjct 850 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGGTTAACC 792 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| | || |||||| | ||| | ||| Sbjct 791 GAATAGGGG-----AGCCGTAGAGAAATCGAGTCCGAATAGGGCGTCCAGTCGCTGGGTG 737 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | |||| ||||| || ||||| || ||| Sbjct 736 TAGACCCGAAACCAAGTGATCTATCCATGGCCAGGATGAAGGTGCCGTAACAGGTACTGG 677 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||| |||||||| | |||| ||| | ||||||| | || |||||||||||||| Sbjct 676 AGGTCCGAACCGACTAGTGTTGCAAAACTAGCGGATGAGCTGTGGATAGGGGTGAAAGGC 617 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 || |||||| |||||||||| || Sbjct 616 TAAACAAACTTGGAAATAGCTGGT 593 >seq323 Length=4734 Score = 123 bits (136), Expect = 5e-26 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 ||| | ||| |||||| |||| | |||||||||||| | |||| ||||| | ||| Sbjct 4734 AGTCGCTGGGTCTAGACCCGAAGCGGAGTGATCTACCCATGGCCAGGGTGAAGCAGAGGT 4675 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 || | | ||||||||||||||| || |||||||| || ||||||||| | || | Sbjct 4674 AAGACTTTGTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTG 4615 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||| |||| |||||| || Sbjct 4614 GGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGT 4579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972689324544