Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq323 358 2e-96 seq1550 349 1e-93 seq324 315 3e-83 >seq323 Length=4734 Score = 358 bits (396), Expect = 2e-96 Identities = 267/310 (86%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||||| |||||| |||||||||||||||| ||| ||||||||||| |||||||||| Sbjct 4416 TCGACTACGAAGCTTA-TCCCCCGCAGTCTCACTGCCACGCTCTCACTTACCGGCATTCG 4474 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||||| ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 4475 GAGTTTGGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 4534 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | |||||||||| |||||||||||||||||||||||||||||||||||||||| | | Sbjct 4535 AGTAAGAAACACGTGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCTCCCGG 4594 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||| | ||||| ||||||| || | |||||||| | ||| ||| Sbjct 4595 TTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCAACATTAGTCGGT 4654 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||||||||||| |||||||| |||||| |||| |||||| ||||||||| ||||| Sbjct 4655 TCGGTCCTCCACAAAGTCTTACCTCTGCTTCACCCTGGCCATGGGTAGATCACTCCGCTT 4714 Query 300 CGGGTCTTGA 309 ||||||| || Sbjct 4715 CGGGTCTAGA 4724 >seq1550 Length=4416 Score = 349 bits (386), Expect = 1e-93 Identities = 415/551 (75%), Gaps = 19/551 (3%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | | |||||||| | | |||||| Sbjct 3489 CGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAAACAGTGC 3430 Query 111 TCTACCTCCGG-GAAGAAA-CACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| ||| || || |||| | |||| |||||||| |||||||||||||||| Sbjct 3429 TCTACCCCCGAAGATGAGTTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCAG 3372 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||| | ||||||||||||||||||||| | ||||| ||||||| || | ||||||| Sbjct 3371 CTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAACTTTTCAA 3312 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | ||| |||||||||||||| | || ||||| |||||||||||||||||||||| Sbjct 3311 CGGTAGTCGGTTCGGTCCTCCAGTCAGTGTTACCTAACCTTCAACCTGCCCATGGATAGA 3252 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 || | | ||||||||| | || ||| | |||||||||| |||||||||||||| Sbjct 3251 TCGCCCGGTTTCGGGTCTATTCCCAGCGACT-AGACGCCCTATTAAGACTCGCTTTCGCT 3193 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||| || ||| | | |||||| || || || || || |||| | | |||| | || Sbjct 3192 ACGCCTCCCCTATTC-GGTTAAGCTTGCCACTGAA-AATAAGTCGCTGACCCATTATACA 3135 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||||| |||| ||||| | || |||| || ||||| || | ||||| ||| | Sbjct 3134 AAAGGTACGCAGTCAC--AGAAC---AAAG-----TCTGCTCCCACTGCTTGTACGCATA 3085 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 ||||||||| |||||||||||||| | | ||||| |||||| |||||||||||||||| Sbjct 3084 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 3025 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || || | |||||||||| || ||||||||| ||| || ||||||| ||| ||||| Sbjct 3024 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 2965 Query 588 CACGAAATTTC 598 || | |||| Sbjct 2964 GACAAGGTTTC 2954 >seq324 Length=1027 Score = 315 bits (348), Expect = 3e-83 Identities = 400/541 (74%), Gaps = 21/541 (4%) Strand=Plus/Plus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTGC 110 ||| |||||||||||| | || |||||| | | |||||||| | | |||||| Sbjct 481 CGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCCATGACCCCCTAGCCTAAACAGTGC 540 Query 111 TCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 |||||| ||| | | || || || || |||||||| |||||| ||||||||||| Sbjct 541 TCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAACCAGCT 599 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT-CAAC 229 || | ||||||| || ||||||||||||||||||||| |||||| || |||||| |||| Sbjct 600 ATTTCCAAGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCGCT-AGTTTTGCAAC 658 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 ||| ||||||| |||||| | |||| ||||| |||| |||||||||||| Sbjct 659 ACTAGTCGGTTCGGACCTCCAGTACCTGTTACGGCACCTTCATCCTGGCCATGGATAGAT 718 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTA 349 ||||| | ||||||||| | | || ||| |||||||||||||||||| |||| ||| Sbjct 719 CACTTGGTTTCGGGTCTACACCCAGCGACT-GGACGCCCTATTCGGACTCGATTTCTCTA 777 Query 350 CGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 ||||| ||| | | ||||||||| || || || | || |||| | | |||| | ||| Sbjct 778 CGGCTCCCCTATTC-GGTTAACCTTGCCACTGAATG-TAAGTCGCTGACCCATTATACAA 835 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 |||| |||| ||||| ||| || ||||| || ||||| ||| Sbjct 836 AAGGTACGCAGTCAC------CCT----TGC----GGGCTCCTACTTTTTGTAAGCATGC 881 Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||||||| Sbjct 882 GGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACT 941 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 || | ||||||||| | |||||||||| ||| || ||||||| ||| ||||| | Sbjct 942 GGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGA 1001 Query 590 C 590 | Sbjct 1002 C 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817393211648