Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq11336 237 4e-60 seq8339 219 1e-54 >seq11336 Length=1455 Score = 237 bits (262), Expect = 4e-60 Identities = 299/409 (73%), Gaps = 15/409 (4%) Strand=Plus/Plus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 || || || ||| |||| |||| || |||||||||||||||||| || ||||||||| Sbjct 728 GATGGTACTGGCCCGGTCTGGACCGGTAACCTGTTCCCGTTCCTGTTTATTACCATTGCC 787 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 ||||||||||| ||||| ||||||||||||||| | || || |||||||| ||| |||| Sbjct 788 TGTGGCGCGGTATCGGGCTTCCATGCGCTGATCGCTTCCGGTACCACGCCGAAGATGCTG 847 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 || | ||| | || ||| | | ||||| |||||||| ||||||||||| || || || Sbjct 848 GCGAATGAAGGGCAGGCCTGCTTTATCGGCTACGGCGGGATGCTGATGGAATCCTTTGTC 907 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 |||||||||||| ||||| | || | | || || || ||||||||||| || |||||| Sbjct 908 GCCATCATGGCGCTGGTTTCTGCGTGTATCATCGATCCGGGCGTGTACTTTGCGATGAAC 967 Query 242 AGCCCG--------GCTGCCATTGTC-GGCAC---CGACGTGGTC---ACCGTGGCGCAA 286 |||||| |||| | | | || || ||||| ||| | | |||||| Sbjct 968 AGCCCGATGGCGGTGCTGGCTCCGGCGGGGACGGTTGACGTAGTCGCTTCTGCGGCGCAG 1027 Query 287 ACCGTCAGCAGTTGGGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAAT 346 ||||||||||||||||||||||||||||| || | ||| | ||| | | Sbjct 1028 GTGGTCAGCAGTTGGGGCTTTGCCATTACGCCGGACACCCTGCATCAAATCGCCAATGAA 1087 Query 347 ATCGGTGAAACCACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 |||||||| |||| | | || || ||||| |||||||| |||| Sbjct 1088 GTCGGTGAACAATCCATTATCTCCCGCGCAGGCGGAGCGCCGACGCTGG 1136 >seq8339 Length=3561 Score = 219 bits (242), Expect = 1e-54 Identities = 199/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 2 GACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGCC 61 || || || ||| || ||||||| |||| |||||||||||||||||||||||||| ||| Sbjct 2523 GATGGTACTGGCCCGCTGTGGAAAGGCGCTCTGTTCCCGTTCCTGTTCATCACCATCGCC 2464 Query 62 TGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCTC 121 ||||| ||||| || || ||||| |||||||| | || || |||||||| ||| |||| Sbjct 2463 TGTGGTGCGGTATCTGGCTTCCACGCGCTGATTGCTTCCGGTACCACGCCGAAGCTGCTG 2404 Query 122 GCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGTG 181 ||| |||| | | |||| || | |||||||| || | ||||||||||| || |||||| Sbjct 2403 GCCTGTGAAACCGATGCGCGCTTTATCGGTTATGGTGCGATGCTGATGGAATCCTTCGTG 2344 Query 182 GCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAAC 241 || || |||||| ||||||| || || | || || || || |||||||||| |||||| Sbjct 2343 GCGATTATGGCGCTGGTTGCTGCGTCTATCATCGAACCGGGTCTGTACTTCGCGATGAAC 2284 Query 242 AGCCCGGCTGC 252 | |||| |||| Sbjct 2283 ACCCCGCCTGC 2273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161467844768