Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq323 352 7e-95 seq1550 210 5e-52 seq324 194 4e-47 >seq323 Length=4734 Score = 352 bits (390), Expect = 7e-95 Identities = 340/443 (77%), Gaps = 45/443 (10%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| |||||||||||| |||| || ||| || || Sbjct 3978 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTCACCCTGGGCGGATTAACCTGGCC 4037 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||||||||||| | ||||||||| | ||| ||| ||| ||||||||||||||| Sbjct 4038 CAGGAACCCTTGGTCATTCGGCGGACAAGTTTCTCACTTGTCTTTCGCTACTCATGCCTG 4097 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA--CACG 178 ||||||||||| || ||||||||| |||| | || ||||| ||| || || | Sbjct 4098 CATTCTCACTCCCACACCCTCCACCACTAGATCACTCTGCGGCTTC--CACGGATGCAGG 4155 Query 179 ACGCTCCCCTACCCAACCACACA---------------------GGTTGCC-----ACA- 211 ||||||||||||||| |||||| ||| ||| ||| Sbjct 4156 ACGCTCCCCTACCCACCCACACCACTAGACAACCCCCCAAAAGGGGTCGCCGATGTACAT 4215 Query 212 --------------GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATC 257 |||||||||| |||| |||||||||||||| ||||||| | ||| Sbjct 4216 GTGTGAGTGCCGCGGCTTCGGCGGTGTACTTGAGCCCCGCTACATTGTCGGCGCAGGATC 4275 Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 4276 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCT 4335 Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGA 377 |||||||| ||| || ||||||||||| ||||| ||| | ||||||||||||||| | Sbjct 4336 GGTTGTCTTCGCGACCCCACATCCTTTTCCACTTAGTACACGCTTAGGGGCCTTAGCCGG 4395 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 |||||||||||||||||||||| Sbjct 4396 CGATCTGGGCTGTTTCCCTCTCG 4418 >seq1550 Length=4416 Score = 210 bits (232), Expect = 5e-52 Identities = 294/404 (73%), Gaps = 9/404 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| | || ||||||||||||| |||||||||| | | || ||| | Sbjct 3939 CGACTACGCTTTTCAGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 3880 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||||||| | Sbjct 3879 CAGGAACCCTTGGTCTTCCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTCA 3820 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || | || | || ||||| | || ||| Sbjct 3819 GCATTCGCACTTCTGAT-ACCTCCAGCAAGCT-TCTCAACTCACCTTCAACGGCTTACAG 3762 Query 178 GACGCTCCCCTACCCAACCACACAGGTTG---CCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | ||| | || || ||||||||| | || ||| |||| Sbjct 3761 AACGCTCCCCTACCGCATCACTTACGTGATACCCGCAGCTTCGGTGCATGGTTTA-GCCC 3703 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | ||| ||||||||||||||||||| ||||| |||| | Sbjct 3702 CGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGGT 3643 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| ||||||||||||||| |||||| || ||||||| ||||||||| | Sbjct 3642 GGCTGCTTCTAAGCCAACCTCCTGGCTGTCTATGCCTTCCCACATCGTTTCCCACTTAAC 3583 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 3582 CATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 3539 >seq324 Length=1027 Score = 194 bits (214), Expect = 4e-47 Identities = 294/407 (72%), Gaps = 20/407 (5%) Strand=Plus/Plus Query 4 CTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTG 63 |||||| | || ||||||||||||| ||||||||||| || || ||| | | | Sbjct 33 CTACGCATCTCTGCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCGTAG 92 Query 64 GAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCA 122 |||||||||| ||||| |||| || |||||| | || |||| ||| | ||| Sbjct 93 GAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCAGCA 152 Query 123 TTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACACGAC 180 ||| |||| | || | ||||| || || |||| | || ||||| | || ||| || Sbjct 153 TTCGCACTTCTGAT-ACCTCCAGCA-ACCCTCACAGGCCACCTTCAACGGCTTACAGAAC 210 Query 181 GCTCCCCTACC-CAACCACACAGGTTGCCA-----CAGCTTCGGCGGATAACT---TAAG 231 ||||||||||| | || | | |||| | ||||||||| ||||| | || Sbjct 211 GCTCCCCTACCACTTGCA-ATAAATTGCAAATCCGCAGCTTCGG----TAACTGGCTTAG 265 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || Sbjct 266 CCCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAT 325 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 |||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| Sbjct 326 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTTTGCCTTCCCACATCGTTTCCCACTT 385 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || || |||||| ||||||||| | |||||| ||||||||||| Sbjct 386 AGCCA-ATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177466024448