Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq324 511 2e-142 seq1550 376 8e-102 seq323 241 4e-61 >seq324 Length=1027 Score = 511 bits (566), Expect = 2e-142 Identities = 412/487 (85%), Gaps = 17/487 (3%) Strand=Plus/Minus Query 1 TCGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 ||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 769 TCGAGTCCGAATAGGGCGTCCAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTATCCA 710 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||||||||||||| |||||| | ||||||||||||||| |||| ||||| |||| Sbjct 709 TGGCCAGGATGAAGGTGCCGTAACAGGTACTGGAGGTCCGAACCGACTAGTGTTGCAAAA 650 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 649 CTAGCGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 590 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATG 239 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | Sbjct 589 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATTACCTGCGGGGGTAGAGCACTGTTTAG 530 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAAT-GCGCATCAGTTTTA 298 ||||||||||||| ||||||||||||||| |||||||||||||| |||| || || Sbjct 529 GCTAGGGGGTCATGGCGACTTACCAAACCTATGCAAACTCCGAATACCGCA-GAG---TA 474 Query 299 CCGC--GGGAGTGAGGGCA-TGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | || ||||| || ||| ||||||||| ||||| | | ||||| || || || || Sbjct 473 CAGCTTGGGAGACAGAGCACCGGGTGCTAACGTCCGGACTCAAGAGGGAAACAACCCAGA 414 Query 356 CTATCAGCTAAGGCCCCGAAA--TGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 | ||||||||| ||| ||| || ||||||| | ||||| || || || || Sbjct 413 CCGCCAGCTAAGGTCCCTAAAATTG---GCTAAGTGGGA--AACGATGTGGGAAGGCAAA 359 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||| ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| Sbjct 358 GACAGCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACT 300 Query 474 AGTCGAG 480 |||||| Sbjct 299 GGTCGAG 293 >seq1550 Length=4416 Score = 376 bits (416), Expect = 8e-102 Identities = 429/564 (76%), Gaps = 13/564 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || |||||| | |||||||||| ||||||||||||| | |||||| |||| Sbjct 3201 CGAGTCTTAATAGGGCGTCTAGTCGCTGGGAATAGACCCGAAACCGGGCGATCTATCCAT 3260 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||| |||||||| | Sbjct 3261 GGGCAGGTTGAAGGTTAGGTAACACTGACTGGAGGACCGAACCGACTACCGTTGAAAAGT 3320 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| Sbjct 3321 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 3380 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | ||| | ||||||||||||||||||| | Sbjct 3381 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAACTCATCTTCGGGGGTAGAGCACTGTTTCG 3440 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 ||||||||||||| |||||||||||||| |||||||||||||| | | | | ||| Sbjct 3441 GCTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCGAAGAATGTTAT 3500 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 3501 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 3558 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | | ||||| | ||||| || || || ||||| Sbjct 3559 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCATAGACA 3616 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 3617 GCCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGGTC 3675 Query 478 GAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG-ATC 535 ||| | | ||| ||| || | |||| ||| | |||||||| | ||| ||| Sbjct 3676 GAGTCGGCCTGCGCGGAAGATGTAACGGG-GCTAAACCATGCACCGAAGCTGCGGGTATC 3734 Query 536 ATTTATATGAT-CGGTAGGGGAGC 558 | || |||| |||||||||||| Sbjct 3735 ACGTAAGTGATGCGGTAGGGGAGC 3758 >seq323 Length=4734 Score = 241 bits (266), Expect = 4e-61 Identities = 338/466 (73%), Gaps = 14/466 (3%) Strand=Plus/Minus Query 21 AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGT 80 ||||||||||| |||||||||| | ||||||||||||||||||||| ||||| | ||| Sbjct 4734 AGTCGCTGGGTCTAGACCCGAAGCGGAGTGATCTACCCATGGCCAGGGTGAAGCAGAGGT 4675 Query 81 AACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA 140 || || |||||| ||||||| ||||||||||||||||||| |||||| ||||| | Sbjct 4674 AAGACTTTGTGGAGGACCGAACCGACTAATGTTGAAAAATTAGCGGATGACTTGTGGCTG 4615 Query 141 GGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAG 200 |||||||||||| || ||||| ||| ||||||||||||| |||||| |||||||| Sbjct 4614 GGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTCCCCGAAATGCATTTAGGTGC 4555 Query 201 TGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTATGG-CTAGGGG---GTCATTG 254 || ||| || | | | || |||||||| |||| |||| | | ||| || | Sbjct 4554 AGCGTCACGTGTTTCTTACTGGAGGTAGAGCTACTG-GATGGCCGATGGGCCCTACAAGG 4496 Query 255 CGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGC 314 ||| || | | |||||||||||||| | ||| | || || |||||| Sbjct 4495 TTACTGACGTCAGC----CAAACTCCGAATGCCGGTAAGTGAGAGCGTGGCAGTGAGACT 4440 Query 315 ATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGA 374 ||| | |||| | ||| ||||||| || | || || | ||||||||||| | Sbjct 4439 GCGGGGGATAAGCTTCGTAGTCGAGAGGGAAACAGCCCAGATCGCCGGCTAAGGCCCCTA 4380 Query 375 AATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTG 434 | | |||||| || || || || | | || |||||| | |||| |||||||| Sbjct 4379 AGCGTGTACTAAGTGGAA--AAGGATGTGGGGTCGCGAAGACAACCAGGAGGTTGGCTTA 4322 Query 435 GAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||||| | || ||||||||||||| |||||||| ||| || Sbjct 4321 GAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGTCAAG 4277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689407774208