Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq7475 297 5e-76 >seq7475 Length=18404 Score = 297 bits (328), Expect = 5e-76 Identities = 541/790 (68%), Gaps = 4/790 (1%) Strand=Plus/Minus Query 37652 ATGAAACAATATTTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTCGAAAAAGAAGAC 37711 |||||||| |||||||| || ||||| | | | || | ||| | ||| | ||| Sbjct 17486 ATGAAACAGTATTTAGAACTGATGCAAAAAGTGCTGGATGAAGGCACACAGAAAAACGAC 17427 Query 37712 CGAACGGGCGTCGGCACGCTGTCGGTGTTCGGCCGCCAGCTCCGCTTCAACTTACAAGAT 37771 || || || ||| ||||| || | || || | ||| | || || || | || || Sbjct 17426 CGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAGGAA 17367 Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || || ||||| || || || ||| | ||| | ||||| |||||| |||| ||||| Sbjct 17366 GGGTTCCCGCTGGTTACGACTAAACGCTGCCATTTACGCTCGATCATTCATGAGCTGCTG 17307 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 |||||||| | ||||| || ||||| ||| |||| || || ||| | || ||| Sbjct 17306 TGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAATCTGG 17247 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 || || |||||||| |||||||| || | |||||| |||| ||| ||||||||| || Sbjct 17246 GACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCGCGCG 17187 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATC--GACCAGATCGCATGGGTTGTCGAAGAGATCA 38009 ||| |||| || | |||| ||||||||| | ||| | | || ||| Sbjct 17186 TGGCCTACGCCAGATGG--ACGCCATATTGACCAGATCACCACGGTGTTAAACCAGCTCA 17129 Query 38010 AACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACG 38069 || | ||| | || ||||| | | || ||| ||||| || | || |||| Sbjct 17128 AAAATGACCCGGACTCTCGCCGTATCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATA 17069 Query 38070 AGATGAAGCTGCCGCCGTGTCATTACGCCTTTCAGTTCTATGTCGCCAACGGCCGGTTGT 38129 | ||| |||| ||||||| ||| ||| ||||| || || || | ||| | | | Sbjct 17068 AAATGGCGCTGGCGCCGTGCCATGCGTTCTTCCAGTTTTACGTAGCGGATGGCAAGCTCT 17009 Query 38130 CATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCGA 38189 | ||| | | ||||| || ||| ||| | || |||||||||||||| || | Sbjct 17008 CCTGCCAACTGTATCAGCGTTCGTGCGATGTGTTCCTCGGCTTGCCGTTTAACATTGCCA 16949 Query 38190 GCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTCA 38249 ||||| | |||||| ||| ||| | || || || ||||| |||| || ||||| | Sbjct 16948 GCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGATTTTG 16889 Query 38250 TTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAACTGCAGC 38309 | | ||||| |||||| || |||||| |||||| |||| ||| || | ||||||| Sbjct 16888 TCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCTGCAGC 16829 Query 38310 TGACGCGCGAGCCGCGCCCGCTGCCGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCT 38369 | | || || |||||| ||||||||||||| || | ||||| ||||| ||||| | Sbjct 16828 TTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATCTATTT 16769 Query 38370 TTGACTATGAATACGACGACTTTGAAATCGTCGGCTACGATCCGCATCCGGCGATTAAAG 38429 |||||||| | ||| ||||| ||||| | ||||||||||||||||| | ||||||| Sbjct 16768 TTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTATTAAAG 16709 Query 38430 CACCGGTGGC 38439 | || ||||| Sbjct 16708 CGCCAGTGGC 16699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130622350291050