Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq7475 163 4e-35 >seq7475 Length=18404 Score = 163 bits (180), Expect = 4e-35 Identities = 229/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 196781 TCTTGTCAGCTGTATCAGCGTA-GTGCGGATATGTTCCTCGGTGTACCGTTCAACATCGC 196839 || || || |||||||||||| ||||| || |||||||||| | ||||| ||||| || Sbjct 17009 TCCTGCCAACTGTATCAGCGTTCGTGCG-ATGTGTTCCTCGGCTTGCCGTTTAACATTGC 16951 Query 196840 GTCTTACGCATTGCTGATTCACATGGTGGCGCAACAGGTTAACATGGTACCGGGCGAGTT 196899 ||| | || || | |||||| ||||||| ||| | ||| | ||| || || Sbjct 16950 CAGCTACTCCCTGTTGGTGCACATGATGGCGCAGCAGTGCGATCTGGAAGTGGGTGATTT 16891 Query 196900 CGTTTGGACTGGCGGTGACGTCCACATCTACTCCAATCACATGGAACAGGTAGAAGAACA 196959 || ||||| || || ||| ||| | ||| |||||| ||||| || | || Sbjct 16890 TGTCTGGACCGGTGGCGACACGCACCTGTACAGCAATCATATGGATCAAACGCATCTGCA 16831 Query 196960 GCTGTCTCGTAAACCGAAAGCGTTGCCGACGCTGGTTATCAAACGCAAACCGGACAGTAT 197019 ||| ||| ||||| ||| |||||| ||||||||||||||| || || || ||| Sbjct 16830 GCTTAGCCGTGAACCGCGCGCGCTGCCGAAGCTGGTTATCAAACGTAAGCCTGAATCTAT 16771 Query 197020 CTTCGATTACAAATTCGAAGACTTCGAACTGGTAGGCTACGATCCGCATCCGGCGATTAA 197079 || || || ||||||||||||||| | | |||||||||||||||||| | ||||| Sbjct 16770 TTTTGACTATCGCTTCGAAGACTTCGAAATTGAAGGCTACGATCCGCATCCTGGTATTAA 16711 Query 197080 AGCCCCGGTGGCTATTTAA 197098 ||| || |||||||| ||| Sbjct 16710 AGCGCCAGTGGCTATCTAA 16692 Score = 138 bits (152), Expect = 2e-27 Identities = 176/240 (73%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 196124 GACCGTACCGGCACAGGCACTACGTCCTATCTCGGCGCACAGATGCGCTTCGATCTGCAA 196183 ||||||||||| || || || ||| | | || |||||||| || ||||||| Sbjct 17429 GACCGTACCGGAACCGGAACGCTTTCCATTTTTGGTCATCAGATGCGTTTTAATCTGCAG 17370 Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACT-CCATCTGCGTTCCATCATTCATGAACT 196242 || || ||||||||||| || || || | || |||| | || || ||||||||||| || Sbjct 17369 GAAGGGTTCCCGCTGGTTACGACTAA-ACGCTGCCATTTACGCTCGATCATTCATGAGCT 17311 Query 196243 GCTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTAT 196302 ||||||||| | | || ||||||||| | |||||| |||| ||| ||||| || Sbjct 17310 GCTGTGGTTTTTGCAGGGCGACACCAACGTTGCCTACCTGCATGAAAACAACGTCTCAAT 17251 Query 196303 CTGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGGCG 196362 |||| |||| |||||| | ||| |||||| | || |||||||| || || || ||||| Sbjct 17250 CTGGGACGAATGGGCGGATGAAAACGGTAATTTAGGCCCGGTTTATGGCAAACAATGGCG 17191 Score = 93.3 bits (102), Expect = 7e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 196550 CGCCGTATCATTGTATCGGCCTGGAACGTCGGCGAGCTAGACGATATGGCGTTAGCTCCA 196609 ||||||||||| || || || ||||||||||||||||| || | |||||| | || || Sbjct 17111 CGCCGTATCATCGTTTCCGCATGGAACGTCGGCGAGCTGGATAAAATGGCGCTGGCGCCG 17052 Query 196610 TGCCATGCTTTCTTCCAGTTTTAC 196633 |||||||| ||||||||||||||| Sbjct 17051 TGCCATGCGTTCTTCCAGTTTTAC 17028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 771432677026440