Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq9716 150 5e-32 >seq9716 Length=6568 Score = 150 bits (166), Expect = 5e-32 Identities = 472/721 (65%), Gaps = 39/721 (5%) Strand=Plus/Minus Query 4886 GGTTCTGGCTGGGTCGGTGAGACCGATGCACGTGCTGAAACAGCAACCCCGAAGTTTGCA 4945 || || ||||||||||| |||||||| || ||||||| || || ||| | | || Sbjct 4741 GGCTCCGGCTGGGTCGGCGAGACCGACCAGCGGCCTGAAACGGCCACTCCGGTGCTGGCG 4682 Query 4946 GAGTATTCCTTCAAGTTCGGTGAAATTTACGCCACCCCAGGTGTGACGCAAATCCTCCTG 5005 | | | |||| | |||||||| || |||| ||| | || ||| || ||||| Sbjct 4681 GCGCTTGGCTTCGGGCATGGTGAAATCTATGCCAACCCGGCTGCGACTCAGCAGATCCTG 4622 Query 5006 GAAGACAGCGAGATCGATATTGCCTCCTATCTGGCCGGTGAAGTTGATCTCGAATTTGCT 5065 || || ||||||||| | || | | | |||||| | ||||| | || || || Sbjct 4621 GACGATAGCGAGATCAACATCGAGGCATGGCTGGCCAGCGAAGTACAGGCAGAGTTCGCG 4562 Query 5066 CAGCAGGAAGGCGTAGCGTTCCTCTCTGGCGACGGTGTGAACAAGCCGAAGGGCGTTCTG 5125 ||||||||||| | || ||| || ||||||||| ||||| ||||| || | ||| Sbjct 4561 GAGCAGGAAGGCCTGGCTTTCATCAGTGGCGACGGCGTGAAGAAGCCTGCCGGTATCCTG 4502 Query 5126 ATGTATGACGCAACGGCGGAAGGTGCTCTCCAGGCTGGTGAAAAGCACCCGCTTGGCCCT 5185 | || | | | ||| || | ||| || | ||||| || ||||| | Sbjct 4501 ACCTACGTCAC--CGGTGG--------CGCCAA--TGCGGCCAAGCATCCCTTTGGCGC- 4455 Query 5186 GTGCTTGAAGTCAATACCGGTGACGCTGCCGCAT---TGACCGCCGATGGGATTATCGAT 5242 | | | |||| | | | | |||||| || | | | |||||| | || Sbjct 4454 --GATCAAGGTCACCAACAGCGGCGCTGCAGCCGACATCAGCTCCGATGCCGCGCTGGAC 4397 Query 5243 CTTGTCTATGCGATCCCGTCGGAACGCATCACGCCAAGCTCGGCCTTCTATCTGAACCGC 5302 || ||||||| | || || | | || | || || | | | ||||| | | Sbjct 4396 CTGATCTATGCACTGCC-----AAAGAAGTACCGCCAGAACGCGCGTTT-TCTGACCAAC 4343 Query 5303 AA---GACGCATTCCGTTG-TGCGTAAGATGAAGGATGGTCAGGACAATTATCTGTGGCA 5358 || ||| ||| || | |||| ||| | ||||| || |||| |||||| |||||||| Sbjct 4342 AACCTGAC-CATCGCGAAGCTGCGCAAGCTCAAGGACGGCCAGGGCAATTACCTGTGGCA 4284 Query 5359 GCCGCCATATCAGGCTGGTCAGCCCGCCCAGATTTTG---GGTTACGCCACCCATGAACT 5415 ||| | || |||||||||||||| || ||| || |||| | |||| Sbjct 4283 ACCGTCTGCCCAAGCTGGTCAGCCCGC---GACTTTCCACGGCTACGGCCTGGCTGAA-- 4229 Query 5416 GTCGGGTA--TGCCGGATGTTGCAGCCAATGCGATCCCGGTCATCTTCGGAGACATGGCG 5473 | || | | |||| ||||| ||||||||||| | ||| || | ||||| ||| | | Sbjct 4228 GACGAGAACATGCCCGATGTGGCAGCCAATGCCGTGCCGATCCTGTTCGGCGACTTCAAG 4169 Query 5474 CAGGGCTATCGCATCTTTGATCGCCTCGGAGTTCAGGTTCTCCGCGACCCCTACACCAAG 5533 | ||||||| ||| | || ||| | || || | || || |||||||| ||||||||| Sbjct 4168 CGCGGCTATCTGATCGTCGACCGCATGGGCGTGCGCGTGCTGCGCGACCCTTACACCAAG 4109 Query 5534 AAGCCTTACGTGCTGTTCTACACTCGCAAGCGTGTCGGCGGTGGCCTCTGGAACCCAGAG 5593 ||||| || |||||||||||||| |||||| || ||||| ||| | |||||| ||| Sbjct 4108 AAGCCCTATGTGCTGTTCTACACGACCAAGCGCGTGGGCGGCGGCGTGCAGAACCCCGAG 4049 Query 5594 T 5594 | Sbjct 4048 T 4048 Score = 147 bits (162), Expect = 7e-31 Identities = 197/270 (73%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 3716 TCAACTCTCCGGGCGGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTGCGCGCGC 3775 ||||||| |||||||| |||||||| || || |||| |||||||| |||||||||| || Sbjct 5933 TCAACTCCCCGGGCGGCGACTTCTTCGAGGGCATGGCCATCTACAACCTGCTGCGCGAGC 5874 Query 3776 ACCCGGCGAAAGTCACAGTGCGCATTCTCGGCATGGCCGCTTCTGCCGCATCTGTTATCG 3835 || ||| || || || | ||| | || ||| ||||||| || | || || || || | Sbjct 5873 ACAAGGCCAAGGTGACCATCCGCGTGCTGGGCGTGGCCGCCTCGGTGGCTTCGGTGATTG 5814 Query 3836 CTATGGCCGGTGATGAAGTCCTGATCGGCAA-GGCAGGCTTCATTATGGTGCACAACGCT 3894 | |||||||| || || ||||||| || | ||| | ||| | ||| | |||||||| Sbjct 5813 CCATGGCCGGCGACGAGATCCTGATGGGTGATGGCTCG-TTCCTGATGATCCACAACGCC 5755 Query 3895 TGGGTTGTCGCGATGGGCAACCGCCACGATCTGGCCGA---AGCCGCGAAGACCATGGAA 3951 |||| || || | || ||||||||||| || |||| |||||| | ||| Sbjct 5754 TGGGCCGTGGCCGTCGGAAACCGCCACGACATGACCGACACAGCCGCCGTG---CTGGCG 5698 Query 3952 CCATTCGATGACGCGATGGCAACGCTTTAT 3981 || ||||||| ||||||||| |||| ||| Sbjct 5697 CCGTTCGATGCCGCGATGGCTGCGCTGTAT 5668 Score = 113 bits (124), Expect = 1e-20 Identities = 202/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 2927 CAGATCGAGGAGATTGGCCGTGCATTTGGTGTGCCGCGTCCTTTCCTCGGCGTGGACGAT 2986 |||||||||||| | | |||| | |||||||| || || | || |||| || Sbjct 6559 CAGATCGAGGAGGTGGCCCGTCTGTACGGTGTGCCCCGCCCGCTGCTGATGATGGATGAC 6500 Query 2987 ACAAGCTGGGGTTCAGGTATCGACGTTCTTGGTCAGATA-TTCGTCCGGTACGCGCTCAA 3045 || || ||||| || || ||||| || || || | ||||| | || | || | | Sbjct 6499 ACCAGTTGGGGCTCCGGCATCGAGCAGCT-GGCCATCTTCTTCGTGCAGTTCACGATTAC 6441 Query 3046 TCCGTGGTTCACGGCTTGGGAGCAGGCAATCAAACGTTC-CTGCATGACCGATAAAGAGC 3104 ||| | |||||||| ||||||||||| | | || || |||| |||| ||| ||| Sbjct 6440 GCCGCGCTTCACGGCCTGGGAGCAGGCCCTGGAGCGCTCGCTGC-TGACGGATGCGGAGA 6382 Query 3105 GTGAGCAGTATGAAGTCAAGTTCAACGCTGGCGCTCTGTTGCGCGGCTCCATGAAAGATC 3164 | | ||| || | |||||||||||| |||| ||| |||||||| | | || || | Sbjct 6381 GGGGGCACTACTACTTCAAGTTCAACGAGCGCGCGCTGCTGCGCGGCACGCTCAAGGACC 6322 Query 3165 AGGCTGAATTTTTCGCCAAGGCTCTCGGCTCTGGCGGGCATCAGCCATGG 3214 |||| || | ||||||||||| || ||| | || || || ||||||||| Sbjct 6321 AGGCGGACTACTTCGCCAAGGCGCTGGGCGCCGGTGGCCACCAGCCATGG 6272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149864550282486