Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20MCB_20[genbank_20GCA_5F000934875.1_202015-02-26] 11,377 sequences; 38,321,349 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq4798 120 2e-22 >seq4798 Length=3577 Score = 120 bits (132), Expect = 2e-22 Identities = 250/374 (67%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 27099 ACCACAGCAGAAGGAGTAGATCCGTGGGACATGAACCTGAATGGAAAGTTGAAAAGCAGC 27158 ||||||||| | ||| || |||||| || |||| || |||||||||||||| |||| Sbjct 1684 ACCACAGCATTAAGAGGTGAGTCGTGGGTAATCAACCAGAGTGGAAAGTTGAAAAACAGC 1743 Query 27159 CCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGTCTGCATGGCGGTTATGAAG 27218 | ||||||||||||||||| | || || || | | | | ||| || ||||||| Sbjct 1744 CTGCGTGGCTGGTGGCTGCGATCAGAAGAACTATCGCTGATTTACCTGGTGGCTATGAAG 1803 Query 27219 AAGCTGCGGAA-----TGG-----------CTG--GATGTCACC------AAAGATGCTC 27254 ||||||| ||| ||| ||| || || ||| | ||| | Sbjct 1804 AAGCTGCTGAAATCCTTGGGGTATATAAATCTGATGACGTAACCCCGGCAACCGATCCAT 1863 Query 27255 TGTTTAACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTAC 27314 || |||||| || |||||| |||||||| ||||||||| | || |||||| |||| Sbjct 1864 TGCATAACCGACTTCGTACTACCGGTGATCAAATCTTCCCGTTGGGATGGGCGATGGTCT 1923 Query 27315 TGCAACGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCG 27374 | || ||| || || | | || | ||| || | || ||| || || || Sbjct 1924 TACAGGCTGCTGGTGGTTCAAACCATATCGCAAATGCTGTTGCCCGGAACTCGAACGGTC 1983 Query 27375 TTTTTGTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGC 27434 | ||||| || |||| ||| | || || || |||||||| || || ||||||||||| Sbjct 1984 TATTTGTGCCATTGGCCGATGTTGATGATGTTGATAACGCCGACATCAATCAGCGCCTTA 2043 Query 27435 TGGAAGCGATTGAG 27448 ||||| | || ||| Sbjct 2044 TGGAATCCATCGAG 2057 Score = 120 bits (132), Expect = 2e-22 Identities = 250/374 (67%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 66687 ACCACAGCAGAAGGAGTAGATCCGTGGGACATGAACCTGAATGGAAAGTTGAAAAGCAGC 66746 ||||||||| | ||| || |||||| || |||| || |||||||||||||| |||| Sbjct 1684 ACCACAGCATTAAGAGGTGAGTCGTGGGTAATCAACCAGAGTGGAAAGTTGAAAAACAGC 1743 Query 66747 CCCGCTGGCTGGTGGCTGCGATTAAAAAGACGATTTCCAGTCTGCATGGCGGTTATGAAG 66806 | ||||||||||||||||| | || || || | | | | ||| || ||||||| Sbjct 1744 CTGCGTGGCTGGTGGCTGCGATCAGAAGAACTATCGCTGATTTACCTGGTGGCTATGAAG 1803 Query 66807 AAGCTGCGGAA-----TGG-----------CTG--GATGTCACC------AAAGATGCTC 66842 ||||||| ||| ||| ||| || || ||| | ||| | Sbjct 1804 AAGCTGCTGAAATCCTTGGGGTATATAAATCTGATGACGTAACCCCGGCAACCGATCCAT 1863 Query 66843 TGTTTAACCGCCTGCGTACTGGTGGTGATCAGATCTTCCCGATTGGGTGGGCGCTGGTAC 66902 || |||||| || |||||| |||||||| ||||||||| | || |||||| |||| Sbjct 1864 TGCATAACCGACTTCGTACTACCGGTGATCAAATCTTCCCGTTGGGATGGGCGATGGTCT 1923 Query 66903 TGCAACGTGCCGGAGGAACCTATCACCTGGCACATTCAGTAGCCAGGGCATCAGGTGGCG 66962 | || ||| || || | | || | ||| || | || ||| || || || Sbjct 1924 TACAGGCTGCTGGTGGTTCAAACCATATCGCAAATGCTGTTGCCCGGAACTCGAACGGTC 1983 Query 66963 TTTTTGTTCCGCTGGCAGATATGGAAGAAGTGGATAACGCAGATATTAATCAGCGCCTGC 67022 | ||||| || |||| ||| | || || || |||||||| || || ||||||||||| Sbjct 1984 TATTTGTGCCATTGGCCGATGTTGATGATGTTGATAACGCCGACATCAATCAGCGCCTTA 2043 Query 67023 TGGAAGCGATTGAG 67036 ||||| | || ||| Sbjct 2044 TGGAATCCATCGAG 2057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247440885784792