Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20sp._20TEL-2014_20[genbank_20GCA_5F001513535.1_202016-01- 12] 73,786 sequences; 117,474,248 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2257 125 6e-24 seq44731 89.7 4e-13 >seq2257 Length=6083 Score = 125 bits (138), Expect = 6e-24 Identities = 211/303 (70%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| || ||| ||| | || |||| | | || |||||||| | ||| || | Sbjct 2902 TCTCCCCAGACGTCGTCCAGTCCGGGGCACTCGCGGGGGCACATCAGGGCCCAGTCGGCG 2843 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || | || | ||| || ||||| || | ||||||||| ||| |||||||| Sbjct 2842 TCATCCGAAACCCTCTTCATGAAGAGATCCGGAACCCAGAGGGCCAGGAACAGATCGCGG 2783 Query 66383 GCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGC 66441 || | | ||||||| || ||| || || | || | |||||||||||| || || Sbjct 2782 GCCCTCTCCTCCTCAGGCCCAGTG-TTCTTCCTCAGCGACACGAACTCAAAGATATCCGC 2724 Query 66442 ATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGAC 66501 ||||| || || |||||||||||||| | ||| ||| ||| ||| || || || || Sbjct 2723 GTGCCAGGGCTCGAGGTAGATGGCGAAGGCTCCCGGACGCTTGTTGCCTCCCTGATCCAC 2664 Query 66502 GTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATT 66561 |||||||||| |||||| ||||||| | ||| || | || ||||| || | || || Sbjct 2663 GTAGCGAGCGGTGTTGTTGTAGACACGGAGCATGGGGATCAGTCCGTTCGAGGTACCGTT 2604 Query 66562 GGT 66564 ||| Sbjct 2603 GGT 2601 >seq44731 Length=5866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 || || ||| || |||| || || || || ||||| || | |||||||| |||||||| Sbjct 3810 GAGCGATTCTCGAAGGAAGTCCAGGTCTCTGAGGCCCGGTTCTTCTACGGATTCCAGATC 3751 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 ||||| ||||| |||| || ||||||||||| |||||||| || |||||| Sbjct 3750 GCCATTGAGAACATCCATTCTGAGATGTACAGCAAGCTCATCGAGACCTACATC 3697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397210480267040