Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oscheius_20tipulae_20[genbank_20GCA_5F900184235.1_202017-05-22] 191 sequences; 59,468,623 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq109 149 5e-31 seq126 114 1e-20 >seq109 Length=1818587 Score = 149 bits (164), Expect = 5e-31 Identities = 389/595 (65%), Gaps = 49/595 (8%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || |||||||| |||||||| ||||| || ||||| | |||||||||||| ||||| || Sbjct 200746 GAGGCGAGGTTACAGACAGCAATCTCATCTGGAGCCGAATACTCGACAATCTCGGTACAG 200687 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 |||||| ||| ||||| |||| |||||| || || ||||||||| || |||||| Sbjct 200686 AGATTAGAGCACTTGATGGTTCCCAGATTCTGCTGGTTGGACTTGCGATTACAGGCATCC 200627 Query 66134 TTG---------TACATC------------------------------ATGTACGGAGTG 66154 | |||||| ||||||||| Sbjct 200626 TGTACAGCCAATTACATCGGCAGAAAAACAAAAAATACCTTGTATACAATGTACGGAAGT 200567 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGC-CAAAGAGCG--CGTGCCTTCACCGTA 66211 || ||||| | |||||| || | ||||| | ||||| || ||||| ||| | Sbjct 200566 CCAGTCTCGATCTGGGACGAAACCA---CGTGCTCCCAGAGCTTACGCGCCTTGACC-TG 200511 Query 66212 CGTACCGCC-CTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCA 66270 | ||| | | |||| | ||||| | ||| || | ||||| ||| ||||| Sbjct 200510 CTTACGGAAGCGTCCTTCGGACTCGTACTTAGTGTAAAGCTTCTCGAATTCTTCTCCCCA 200451 Query 66271 TACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTC 66330 ||| || || ||||| | | ||||||||||||||||| || ||| ||||| Sbjct 200450 GCAATCGTCCAAACCGGGACATTCACGAGGACACATCAGCGACCAGTCGGTATCTTGTTC 200391 Query 66331 TACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTG 66390 || | ||| || |||||||| ||||| || || |||||||| || || || | Sbjct 200390 GACTCTCTTCATGAAAAGATCAGGGATCCACAGAGCCAGAAAGAGATCACGAGCACGCTC 200331 Query 66391 CTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATG 66449 ||| || || ||| | ||| | || | ||| |||||||| || || ||||| | Sbjct 200330 CTCTTCGGGACCAGTGTTCTTT-CTCAGAGAGCAGAATTCAAAGATATCTGCGTGCCACG 200272 Query 66450 GTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAG 66509 | || |||||||||||||| | || ||| || || || ||||||||||| |||| Sbjct 200271 GCTCGAGGTAGATGGCGAAAGCTCCAGGACGCTTATTTCCTCCCTGGTCGACGTAACGAG 200212 Query 66510 CGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 | ||||||| | || || | ||| || | ||| ||||| ||| | ||||| || Sbjct 200211 CAGTATTGTTGTATACCCGGAGCATGGGAATGAGTCCGTTCGATGTTCCATTTGT 200157 >seq126 Length=3090016 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 61136 AGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACAT 61194 |||| ||| | |||||||||||| ||||||||| | | | ||| || || | Sbjct 2637858 AGGTGGATCTCGGCAAAGACATGAAGGACTGGGAGGCCATGACCGA-CGACGAGAGATTC 2637916 Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 ||||| | ||| ||||| ||||| ||||| || || || |||||||| ||||| | Sbjct 2637917 TTCATCTCTCGTGTTTTGGCCTTCTTCGCCGCCTCTGATGGAATCGTCAACGAGAACCTT 2637976 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAG 61314 | || || ||| | | || || || | || ||||| |||| |||||||||||||| Sbjct 2637977 GTCGAGCGATTCTCCAAAGAAGTCCAGATATCCGAGGCTCGTTTCTTCTACGGCTTCCAA 2638036 Query 61315 ATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 || ||||| ||||| | || |||||||||||||| || ||||| || || ||| Sbjct 2638037 ATCGCCATCGAGAACATTCATTCGGAGATGTACAGCAAGCTAATCGAAACCTATATC 2638093 Score = 105 bits (116), Expect = 5e-18 Identities = 133/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 ||||| ||||| ||| | || ||| |||||||||||||||| || || |||| ||| | Sbjct 2638636 ATCGGAATGAACTGTCGTCTTATGGCGCAGTATATTGAATTCGTCGCGGACCATCTTCTC 2638695 Query 61819 GTCGA-TTTGGGTATG--AAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 ||||| |||| | || |||| |||| || | || ||||| || || |||||||| Sbjct 2638696 GTCGAGCTTGGCTGTGACAAGC---TCTACAACGCCAAGAACCCCTTCGACTTCATGGAA 2638752 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCAACGT 61935 | || || | || || |||||||| |||||||||||| || ||| ||||||||| Sbjct 2638753 AACATCTCCATCGACGGAAAGACGAACTTTTTCGAGAAAAAAGTCTCCGAGTATCAACGT 2638812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567074536240