Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panagrellus_20redivivus_20[genbank_20GCA_5F000341325.1_202013-02-22] 940 sequences; 65,093,147 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq97 262 3e-65 seq585 228 6e-55 seq319 194 1e-44 >seq97 Length=72787 Score = 262 bits (290), Expect = 3e-65 Identities = 434/624 (70%), Gaps = 2/624 (0%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || |||||||| || | ||| ||||| ||| | || ||||| |||||||||||| Sbjct 69929 GACGCCAGATTGCAGACGGCGACCTCATCAGGGGCGCTGTATTCGACGATTTCGGTGCAC 69870 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||||| || || || | ||||| || || ||||| || ||||| || || Sbjct 69869 AGGTTGCTGCATTTGATCGTTCCGAGGTTCTGCTGGTTGCTCTTACGGTTGCAGGCGTCT 69810 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | |||||| || ||||| || || ||||| | |||||| | ||| ||| Sbjct 69809 TTGTAAAGCATGTAGGGGGTGCCAGTTTCGACTTGAGCGCTGATGATGTGCTTCCAGAGA 69750 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTG 66252 |||| ||||| | | | | | | | | | | || ||||| | |||||| | Sbjct 69749 TCGCGAGCCTTGATC-TGCTTTCGGAAACGCTTCTCCGACTCGTATTTCGTGTAGAGCTC 69691 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 ||||| || ||||| || |||| || |||| ||| || |||||||| || Sbjct 69690 CTCGAACTTCTCGCCCCAGCAGTCCTCAAGACCGGGGCACTCGTGGGGGCACATCAGAGA 69631 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || ||| || || ||| || ||||| || |||||||| || ||||| Sbjct 69630 CCAGGTGCCGTCGGTTTCCACGCGCTTCATGAAAAGATCGGGGATCCAGAGAGCATAGAA 69571 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 |||||| || || || | |||||| || |||| || || || | || |||||| Sbjct 69570 GAGATCACGGGCACGCTCTTCCTCAGCACCACGATTCTTCTTCATATCCATGACCTCAAA 69511 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 |||||| || ||||| ||||| |||||||||||||| | ||| ||| ||| || || Sbjct 69510 GATGTCTGCGTGCCACGGTTCGAGGTAGATGGCGAAAGCGCCAGGACGCTTGTTTCCGCC 69451 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 || |||||||||||||| |||||||| ||||| | |||||| || || || || || Sbjct 69450 CTGATCGACGTAGCGAGCAGTGTTGTTGAATACACGGAGCATCGGGACAAGGCCATTGGA 69391 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 || ||| || | ||| ||||||| || || || | ||||||||| || || Sbjct 69390 GACTCCGCCGGTACCAGCAATGTGGGATCCAGTGGCACGGATGTTGTGAACATTGAGCCC 69331 Query 66613 AATACCACCGGCCGTCTTCGAGAT 66636 ||| || ||||| | ||| ||||| Sbjct 69330 AATGCCGCCGGCTGACTTTGAGAT 69307 >seq585 Length=222271 Score = 228 bits (252), Expect = 6e-55 Identities = 1017/1582 (64%), Gaps = 74/1582 (5%) Strand=Plus/Plus Query 65152 CCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACATGCATATT 65211 ||||||||||||||||||||| | | | || || |||| | | || ||||| || Sbjct 91178 CCAAGCATAGAAATGCATCGAGGTACAATGAGCGTAGGTCGGGACCGGCAAATGCAAGTT 91237 Query 65212 CAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGACG 65271 | ||| || |||||| ||| | |||||||| || ||||| || ||||| | | Sbjct 91238 GAGCGATTGCGACTGATCAATGAAGGCTCCACGATCGGCGGCCATCTCGATGAT--GTCC 91295 Query 65272 TCCCGAT--ATCTCCCAGACGGTCTTGTACAGGC----GACGTACCTCAATTGGAATCTC 65325 | | || ||||||||||| ||||||||||| || ||| || ||| || | Sbjct 91296 TTCTGACGGATCTCCCAGACAGTCTTGTACAGCTCCTTGATGTAG-TC---TGGGATG-C 91350 Query 65326 CTCA-ATGTCCTGGACTGAACCAC-GACGTGCAATAATGCGATTACGCATCGACTCTGAC 65383 ||| |||| ||| || || |||| | || || || | || || ||| || | Sbjct 91351 CTCGGATGTTCTGCACCGAGCCACTGGCG-GCGATCAGGCTGTTCTTCATGTCTTCATTC 91409 Query 65384 CACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGCCG 65443 || | |||||||| ||| | | | || || |||| | || |||||| |||| Sbjct 91410 CAGAGGTTCAAATCGACAAGGTCCTTCAGCAGATGCGGATTCACGATTTGGAAAGTGCCG 91469 Query 65444 GACAGTACACGACGGACATAGATGTTGGACGTGAT-GGGTTCAAAGGATTCAGTGTTGCC 65502 || || || |||||| || | ||| || || ||| || | |||||| ||||||| Sbjct 91470 GAAAGGACTCGACGGGTGTACACATTGT-CGGCATAGGGCTCGATGGATTCGTTGTTGCC 91528 Query 65503 TAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATCC 65562 ||||| || || || || || || |||||||| ||||| | | ||||| || | || Sbjct 91529 GAGAATCTGCGCGGTGGAAGCCGTCGGCATGGGGGCGACGAGGAGCGAGTTGCGGACACC 91588 Query 65563 GTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTATCG--TCGACA 65620 |||| | | ||| | || | | |||||| ||| | |||| ||| | ||| Sbjct 91589 GTTCTTCTTGATGAGTTTCCGAAGCGGGGCCCAGTCCCATA--GGTTAGTCGGGTTGACC 91646 Query 65621 TCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTA 65680 | | ||||| || |||||||| | || | |||| || || | | Sbjct 91647 TTC------CACATGTCGTGTTGCAGAATGCCCTTCGACACCGGGGACCCTTCATAGGTC 91700 Query 65681 TCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG--GTCTCGAGTGCGGCAAAATAAA 65738 ||||| | || | ||| |||| | || | | || || || | | || | Sbjct 91701 TCGTAGGCACCATGAATACCGGCCAGTT--CCGCCGACGCTTCAAGGGCACCGTAGTAGA 91758 Query 65739 TGGTCTCGAAAATGCGTCGATTAAGTT--CACGTGCCTCATCGCTCTCGTACGGCATACC 65796 ||||||| || || | || || | || |||| ||| || |||||| | Sbjct 91759 TGGTCTCAAAGATCTGCTTGTTCAGACGCCTCGCGCCT--TCGGAAGCGAACGGCAGTCG 91816 Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 ||| || || | || || || || || || || ||||||||||||||||| ||| Sbjct 91817 CATGAGTTGGAAGGCATCAGCGAGGCCCTGGACGCCGATACCGATGGGACGATGGCGCTT 91876 Query 65857 ATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAAT 65915 || || | | || ||||| || |||||||| || ||||| ||||| || ||||| | Sbjct 91877 GTTCGA-CTTTTCAGCCTCCGGAACAGGGTAATAGTTGATGTCGATGATCTTGTTCAAGT 91935 Query 65916 TGCGTGTCACCACATGCACGATACGTCGCAA-TTGTTCGAAATCAAAATGTTTAGGACGA 65974 | || || | | || | ||| ||||| |||||| || | ||| Sbjct 91936 TCTTGGTGACGGTCTTCGTGACAGCCTTCAACTTGTT-GAAATCGAATTC------ACGG 91988 Query 65975 TCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCT 66034 | ||| |||| || || | | || | || || || |||||||| || Sbjct 91989 TTGGG---GCCG------ACGAAGCGGTTCAACGCGATCGACGCCAGATTGCAGACGGCG 92039 Query 66035 ATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTG 66094 | ||| ||||| ||| | || ||||| || ||||||||||| || || || || || Sbjct 92040 ACCTCATCAGGCGCGCTGTATTCGACGATCTCGGTGCACAGGTTGCTACATTTGATCGTT 92099 Query 66095 CCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTG 66154 || | |||||||| || ||||| || ||||| ||||| ||||| | |||||| || ||| Sbjct 92100 CCGAGGTTCTGTTGGTTGCTCTTACGGTTGCAGGCATCTTTGTAGACCATGTAGGGCGTG 92159 Query 66155 CCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGC-----CTTCACCG 66209 ||||| |||||||| || | | ||| | |||||| | || || ||| || | Sbjct 92160 CCGGTTTCAACTTGAGAGCCGACAATGTGCTTCCAAAGGTCACGGGCAAGGACTTGAC-G 92218 Query 66210 TACGTACCGCCCTACCTTTGCGT--TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACC 66267 ||| ||| ||| || ||||| | |||||| || || || || || Sbjct 92219 ACGGTAGCGC------TTTTCGGACTCGTATTTGGTGTAGAGCTGCTCAAACTCCTCGCC 92272 Query 66268 CCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTG 66327 ||| || |||| ||||||| || || |||||||| ||||| || || Sbjct 92273 CCAGCAATCCTCGAGACCAGGACACTCATGGGGGCACATCAGGGACCAGGTTCCGTCGGT 92332 Query 66328 TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCG 66387 ||| || || ||| || ||||| || |||||||||||||||||||| || || || || Sbjct 92333 TTCGACGCGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGAAGAGGTCACGGGCACG 92392 Query 66388 TTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 || || || || ||| || || | ||||||| || || | ||||||||||| Sbjct 92393 TTCTTCATCGGCACCAGTG-TTCTTCTTGAGATCGAGGACTTCGAAAACGTCGGCATGCC 92451 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | || || || |||| ||| || | || ||| || ||| ||||||| || ||| | Sbjct 92452 AGGGCTCGAGATAGACGGCAAAGGCACCGGGACGCTTACCG---CCTTGGTTGATGTAAC 92508 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 |||| ||||||||||| || | |||||| || || |||| || ||||| |||| Sbjct 92509 GAGCCGTGTTGTTGAAGACGCGGAGCATCGGGACAAGGCCGTGCGAGATGCCACCAGTGC 92568 Query 66567 CGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCG 66626 | ||| ||| ||| || || || | ||| || || | || || ||||| || | Sbjct 92569 CAGCGACACGGGTTCCGGCGGCACGGATGTTGTGGACGTTGATGCCGATGCCACCAGCGG 92628 Query 66627 TCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCT 66686 ||| |||| |||||| | || || ||| ||||| |||| |||||| | Sbjct 92629 ACTTGCTGATGCGAGCACACTGCTTCAGGGTGTCGAAGATGCCTTCAACGGAGTCCTCTG 92688 Query 66687 TGATGGTCAGGAGGTAGCATGA 66708 ||||||| ||| |||| || Sbjct 92689 ACATGGTCAACAGGAAGCAGGA 92710 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 61510 GTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 |||||||| | || ||||| || || ||||| || ||||| ||| | ||| |||| || Sbjct 95317 GTCGAGGGCATCTTCTTCAGCGGGTCCTTTGCGGCCATCTTCTGGCTTAAGGAACGCGGT 95258 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGT 61629 || ||||||||||||||| | ||||||| | || || || || |||||| | ||| | Sbjct 95257 CTCATGCCCGGTCTGACCCACTCCAATGAGCTCATTTCCCGTGATGAGGGCCTTCATCGC 95198 Query 61630 GATTTTGCT 61638 ||||||||| Sbjct 95197 GATTTTGCT 95189 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGA 61491 ||| || |||||||| ||| ||||||| || || | | || | || || ||||| Sbjct 123101 GAAGGCCGATTGGGCGTTCGCGTGGATCAGCA--ACCAGGAAGCGTCCTTCGGCGAACGG 123158 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || || || | |||||||| | || ||||| || || || || || ||||| Sbjct 123159 GTCATCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTCGCGGCCATCTTC 123218 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||| | ||| |||| || || ||||||||||||||| | ||||||| | || || || Sbjct 123219 TGGCTCAAGGAACGCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATTTCCCGT 123278 Query 61612 GACGAGGG 61619 || ||||| Sbjct 123279 GATGAGGG 123286 >seq319 Length=516904 Score = 194 bits (214), Expect = 1e-44 Identities = 416/619 (67%), Gaps = 7/619 (1%) Strand=Plus/Minus Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 |||||||| ||||| || || || ||||| || ||||| || || | | ||||| ||| Sbjct 272264 GTGTTGGCCTTCTTCGCGGCGTCTGACGGCATTGTCAACGAAAACCTGGTCGAACGCTTC 272205 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | |||| || ||||| | ||||| | |||||||||||||| | ||||| || Sbjct 272204 TCCAAGGAAGTCCAAGTCACCGAGGCCAAGTTCTTCTACGGCTTCCAAGTGGCCATCGAA 272145 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA 61386 || | ||| | |||||| | || ||| | ||||| |||| || | ||| Sbjct 272144 AACATTCACAGCCAAATGTACTCCATGCTGATCCAGACGTATATCACCGACGAGAAGGAG 272085 Query 61387 CGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGG 61446 || | | | ||||| |||||| | | | ||| | ||| ||| || |||||| Sbjct 272084 CGCAACCTGCTATTCAACGCCATCTACGAGTTCCCGTTCATCAAGAAGAAGGCCGATTGG 272025 Query 61447 GCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGCATTTG 61504 || ||| ||||||| || || | | || | || || ||||| | | || || | Sbjct 272024 GCGTTCGCATGGATCAGCA--ACCAGGAGGCGTCCTTCGGCGAACGGGTCATCGCTTTCG 271967 Query 61505 CGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | | |||||||| | || ||||| || || || || || ||||| ||| | ||| ||| Sbjct 271966 CCGCCGTCGAGGGCATCTTCTTCAGCGGGTCCTTCGCAGCCATCTTCTGGCTCAAGGAAC 271907 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || || ||||||||||||||| | ||||||| | || || || || |||||| | | Sbjct 271906 GCGGTCTCATGCCCGGTCTGACCCACTCCAATGAGCTCATCTCCCGTGATGAGGGCCTTC 271847 Query 61625 ATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 || | || |||||| | | | ||||||| |||| ||| || || |||| | Sbjct 271846 ATCGCGACTTTGCTTGTCTTATGTTCAAAC---ATCTCAAGAACAAGCCCTCCCAGGAAC 271790 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744 | | | || || | || || || || | ||||||||||| || || ||||| || | Sbjct 271789 GCATCTGCGACATCATCCGCGATGCCGTCAAGATCGAACAGGAGTTCCTCACTGAAGCCT 271730 Query 61745 TGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTG 61804 |||||||| | ||||| ||||| || | || ||| | | || || || | |||| Sbjct 271729 TGCCCGTCGATATGATCGGTATGAACTGCCGCCTCATGGCTGAATACATCGAGTACGTTG 271670 Query 61805 CCGACCGTCTGTTGGTCGA 61823 | || | |||||||||||| Sbjct 271669 CTGATCATCTGTTGGTCGA 271651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563445361600