Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq20536 159 6e-37 seq4402 98.7 2e-18 >seq20536 Length=2568 Score = 159 bits (176), Expect = 6e-37 Identities = 155/194 (80%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGG-CGACG-GTCATCAGTAGGGTAAAACTAACCTGTCT 58 |||||||| | |||| ||| | | ||| |||| ||||||| |||| ||||||| Sbjct 727 TACTAAGCAGGGTTACTATTCGTAACAACGAGTCA-CAGTAGGATAAA-----CCTGTCT 674 Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||||||||||||||||||| || || ||||| | ||||||||||||| | Sbjct 673 CACGACGGTCTAAACCCAGCTCACGTTCTCTGTTGGTGGG-GTACAATCCAACGCTCGGC 615 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||| ||||| | ||||||||||||||||||||| |||||| |||||||||||| Sbjct 614 AAATTCTACTTCGCAAAGATAGGAAGAGCCGACATCGATGGATCAGAAAGCAACGTCGGA 555 Query 179 ATGAACGCTTGGCT 192 || ||| ||| || Sbjct 554 GTGGACGTTTGCCT 541 >seq4402 Length=8396 Score = 98.7 bits (108), Expect = 2e-18 Identities = 108/143 (76%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||| |||| || ||| ||| |||||| ||||||| || || ||||| |||| ||| Sbjct 5513 GGGCGAACCGTCTAACACTTGGCGAATTGTGCTTCGCAATTATTTGAAGAACCGATATCT 5572 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCT---TGGCTGCCACAAGCCAGTTATCCCT 212 ||| | |||||||||| ||||||| ||| | |||||||||||| |||| | |||| Sbjct 5573 AAGAACCAAAAAGCAATGTCGCTACGAAGATTATTTGGCTGCCACAATCCAGCTGCCCCT 5632 Query 213 GTGGTAACTTTTCTGGCACCTCT 235 ||||||||||||| | |||| Sbjct 5633 CAGGTAACTTTTCTGATAACTCT 5655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853883950944