Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parascaris_20equorum_20[genbank_20GCA_5F000951375.1_202014-09-26] 60,399 sequences; 185,376,996 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq40385 379 6e-103 seq30348 232 2e-58 seq3960 86.0 2e-14 >seq40385 Length=1122 Score = 379 bits (420), Expect = 6e-103 Identities = 388/500 (78%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | || | ||| | || || ||||| | |||||||||| Sbjct 592 GTACCCATTCCGATAACCGGCCTCATA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 650 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | || || || ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 651 CCTCATGCCGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATT 710 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 711 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 770 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || |||||||||| |||||||| |||||| | |||| || | ||||||| | Sbjct 771 GGCACATAAACTACCATCGACAGTTGATAAGGCAGACACTTGATAGACACGTCGCCGGTT 830 Query 241 CAAGGCCATGCGATTCGTTA-AGTTATTATGAATCACCAAGGA--GCCCCGAAGGGCGTT 297 | || ||||||||| | || ||||||| || ||||||| | | ||||| || | Sbjct 831 CGAGACCATGCGATCAGCTATAGTTATTCAGAGTCACCAATTAACGGGCCGAAACCCGAT 890 Query 298 GGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGG-GGTTTTTAGCATGTATTAGCT 356 | |||| |||||||| || | | | | || |||| | ||| ||||||||||||| Sbjct 891 TGGTTTTAATCTAATAGATGCGCTCGTCAGAAAATCGGAGCTTTGGTGCATGTATTAGCT 950 Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||||| |||||||| |||| | | ||||| || | ||| ||| | || Sbjct 951 CTAGAATTACCACAGTTATCCACGTAGGATATCAAGATCAAGTATATAATAGCTGTTGTA 1010 Query 417 ATGAGCCATTCGCAGTTTCA-CTGTATAGATTGCTTATACTTAGACATGCATGGCTTAAT 475 ||||||| ||||| |||||| || ||||| || |||||||||||||||||||| Sbjct 1011 ATGAGCCGTTCGCGGTTTCACCTTTATAGGCCATTTGAACTTAGACATGCATGGCTTAGC 1070 Query 476 CTTTGAGACAAGCATATGAC 495 |||||||| |||||||| || Sbjct 1071 CTTTGAGATAAGCATATAAC 1090 >seq30348 Length=1644 Score = 232 bits (256), Expect = 2e-58 Identities = 337/477 (71%), Gaps = 26/477 (5%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||||||| | || || || |||||| ||| ||||| |||||||||| Sbjct 1214 TATTTTTCGTCACTACCTCTACCTGCCGAGAGTGGGTAGTTTACGCGC-TGCTGCCTTCG 1156 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||| |||||||||||||||||| ||||||||| ||||||||| |||| || ||| Sbjct 1155 TTAGATGTG-TAGCCGTTTCTCAGGCTCTCTCTCCGGAGTCGAACCCTTATTCTCCTTTA 1097 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 |||||| | |||||||||| | || |||||||||| |||||||| |||||| | ||| Sbjct 1096 CCCGTTAAAACCATGGTAGACACATAAACTACCATCGATAGTTGATAAGGCAGACACTTG 1037 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCG-TTAAGTTATTATGAATCACCAA-- 279 | || | ||||||| || || ||||||||| | | ||||||| || ||||||| Sbjct 1036 ATAGACACTTCGCCGGTTCGAGACCATGCGATCAGCTGTAGTTATTCAGAGTCACCAATT 977 Query 280 GGAGCCCCGAAGGGCGTTGGTTTTTTAT------------------CTAATAAATACACC 321 | | ||||| | | | |||| || Sbjct 976 GACGGACCGAAACCCAATTGATTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 917 Query 322 CCTTC-CGAAGTCGG-GGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCAT 379 || ||| |||| |||| |||||||||||||||||||||||||| |||||||| Sbjct 916 NNNTCAGGAAATCGGACGTTTGGTGCATGTATTAGCTCTAGAATTACCACAGTTATCCAC 857 Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA-CT 438 | | | | ||||| || | | |||| | ||||||||| ||||| |||||| || Sbjct 856 ATGGCATATCAAGATCAAGTATATAACAACTACTGTAATGAGCCGTTCGCTGTTTCACCT 797 Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGAC 495 |||| || |||||||||||||||||||| |||| ||| |||||||| || Sbjct 796 TAATAGGCCATTTGAACTTAGACATGCATGGCTTAGCCTTTCAGATAAGCATATAAC 740 >seq3960 Length=8954 Score = 86.0 bits (94), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAG-TAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||||| |||||||| | | | ||| |||| || | ||| || | Sbjct 1930 TCTAGAATTACCACAGTTATCCACGGATATCAGGG----TCAAGTATATAATAGGTGTTG 1985 Query 415 TAATGAGCCATTCGCAGTTTCAC-TGTATAGATTGCTTATACTTAGACATGCATGGCTTA 473 |||| || | ||||| ||||||| | ||||| | || |||||||||||||||||||| Sbjct 1986 TAATAAGACGTTCGCGGTTTCACCTTTATAGGCTATTTGAACTTAGACATGCATGGCTTA 2045 Query 474 ATCTTTGAGACAAGCAT 490 |||||||| |||||| Sbjct 2046 GCCTTTGAGATAAGCAT 2062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509487733504