Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq555 334 1e-89
seq583 163 6e-38
seq365 158 2e-36
>seq555
Length=3447
Score = 334 bits (370), Expect = 1e-89
Identities = 269/322 (84%), Gaps = 2/322 (1%)
Strand=Plus/Minus
Query 15 GGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74
|||||||||||| |||||| || ||||||||||||||||||||| | | || |||||
Sbjct 3085 GGGTGAAATAGAACCTGAAACCATACGCCTACAAGCGGTCGGAGCCCATTCGTTGGGTGA 3026
Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTT 134
|||||||||||||||||||||||||||||||||| ||| | || |||||||| |||
Sbjct 3025 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAC-CGTTGCTGGCAAGGTTAAGTACTT 2967
Query 135 CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGA 194
|||| || |||||||| ||||||||| ||||| |||||| ||| || ||||
Sbjct 2966 CAGGTACGC-AGCCGAAGCGAAAGCGAGTCTTAATAGGGCGCTTAGTCAGTAATAGTAGA 2908
Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254
||||||||| ||||||||||||| | |||||||||||| |||||| | ||||||||
Sbjct 2907 CGCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTTTGGGTAACACCAAATGGAGGA 2848
Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314
|||||||||| |||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 2847 CCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAAT 2788
Query 315 CAAACTGGGAAATAGCTCGTAC 336
|||||| |||||||||||||||
Sbjct 2787 CAAACTCGGAAATAGCTCGTAC 2766
>seq583
Length=3271
Score = 163 bits (180), Expect = 6e-38
Identities = 233/325 (72%), Gaps = 10/325 (3%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| |||| || ||||| ||||||||| | |
Sbjct 1014 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTCGGAGCCCTTAGG---G 958
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| ||| || || ||||
Sbjct 957 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 899
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189
| | || || || || |||| |||| | || |||||||| ||| | |||
Sbjct 898 GAATAGGGA-----AGGCGTAGAGAAATCGAGTCCGAATAGGGCGACATAGTCGCTGGGT 844
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
||||| ||||||| |||||||| ||| | |||||||||| |||||||| ||| ||
Sbjct 843 GTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACGTACTG 784
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||||||||||| || |||||||| || |||||| | || |||||||||||||
Sbjct 783 GAGGACCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGATAGGGGTGAAAGG 724
Query 310 CCAATCAAACTGGGAAATAGCTCGT 334
| || ||||| |||||||||| ||
Sbjct 723 CTAAACAAACCTGGAAATAGCTGGT 699
>seq365
Length=5917
Score = 158 bits (174), Expect = 2e-36
Identities = 240/336 (71%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60
|| |||| | ||||| ||||||||| |||||| ||| || ||||| | || |||||
Sbjct 1267 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTTTGCTTACAATCCGTTGGAGCA 1209
Query 61 GAGTGATTCG-GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAG 119
| | | ||||| |||||||||||| | ||||||||| |||||||| | |
Sbjct 1208 CCCTTGTAGGTGTGACAGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGCGATATGTGG 1149
Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178
||||||||| | | || | |||||| || ||||||||| || || |||||||
Sbjct 1148 CGAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGATTC 1093
Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238
||| | | |||||| |||| | |||||||| ||| | |||||||||| ||||
Sbjct 1092 AGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGT 1033
Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298
|| ||| |||||||||||||| | |||||||| | |||||| | || ||
Sbjct 1032 AAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGGATA 973
Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||||||||||||||||||| | |||||| ||
Sbjct 972 GGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGT 937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972782392320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |