Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq555 334 1e-89 seq583 163 6e-38 seq365 158 2e-36 >seq555 Length=3447 Score = 334 bits (370), Expect = 1e-89 Identities = 269/322 (84%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 15 GGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGA 74 |||||||||||| |||||| || ||||||||||||||||||||| | | || ||||| Sbjct 3085 GGGTGAAATAGAACCTGAAACCATACGCCTACAAGCGGTCGGAGCCCATTCGTTGGGTGA 3026 Query 75 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTT 134 |||||||||||||||||||||||||||||||||| ||| | || |||||||| ||| Sbjct 3025 CGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAC-CGTTGCTGGCAAGGTTAAGTACTT 2967 Query 135 CAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCTAGA 194 |||| || |||||||| ||||||||| ||||| |||||| ||| || |||| Sbjct 2966 CAGGTACGC-AGCCGAAGCGAAAGCGAGTCTTAATAGGGCGCTTAGTCAGTAATAGTAGA 2908 Query 195 CGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGA 254 ||||||||| ||||||||||||| | |||||||||||| |||||| | |||||||| Sbjct 2907 CGCGAAACCGTGTGATCTACCCATGGGCAGGTTGAAGTTTGGGTAACACCAAATGGAGGA 2848 Query 255 CCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314 |||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||| Sbjct 2847 CCGAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAAT 2788 Query 315 CAAACTGGGAAATAGCTCGTAC 336 |||||| ||||||||||||||| Sbjct 2787 CAAACTCGGAAATAGCTCGTAC 2766 >seq583 Length=3271 Score = 163 bits (180), Expect = 6e-38 Identities = 233/325 (72%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||| ||||||||| | | Sbjct 1014 AGGGGAGTGAAATAGATCCTGAAACCGCATGCTTACAAAAAGTCGGAGCCCTTAGG---G 958 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| ||| || || |||| Sbjct 957 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTACAT-TCAGTGGCAAGCTTAACC 899 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCG 189 | | || || || || |||| |||| | || |||||||| ||| | ||| Sbjct 898 GAATAGGGA-----AGGCGTAGAGAAATCGAGTCCGAATAGGGCGACATAGTCGCTGGGT 844 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| |||||||| ||| | |||||||||| |||||||| ||| || Sbjct 843 GTAGACCCGAAACCAAGTGATCTATCCATGGCCAGGTTGAAGGTGCGGTAACACGTACTG 784 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||||||||||| || |||||||| || |||||| | || ||||||||||||| Sbjct 783 GAGGACCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGATAGGGGTGAAAGG 724 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | || ||||| |||||||||| || Sbjct 723 CTAAACAAACCTGGAAATAGCTGGT 699 >seq365 Length=5917 Score = 158 bits (174), Expect = 2e-36 Identities = 240/336 (71%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC 60 || |||| | ||||| ||||||||| |||||| ||| || ||||| | || ||||| Sbjct 1267 TACCCCGGG-AGGGGAGTGAAATAGTACCTGAAACCGTTTGCTTACAATCCGTTGGAGCA 1209 Query 61 GAGTGATTCG-GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAG 119 | | | ||||| |||||||||||| | ||||||||| |||||||| | | Sbjct 1208 CCCTTGTAGGTGTGACAGCGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGCGATATGTGG 1149 Query 120 CGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG- 178 ||||||||| | | || | |||||| || ||||||||| || || ||||||| Sbjct 1148 CGAGGTTAACC-CGTGTGG---GGTAGCCGTAGCGAAAGCGAGTCTGAATAGGGCGATTC 1093 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 ||| | | |||||| |||| | |||||||| ||| | |||||||||| |||| Sbjct 1092 AGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCATGGCCAGGTTGAAGCGACGGT 1033 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 || ||| |||||||||||||| | |||||||| | |||||| | || || Sbjct 1032 AAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAACTGAGGGGATGAGCTGTGGATA 973 Query 299 GGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| | |||||| || Sbjct 972 GGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGT 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972782392320