Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000150.1 Length=138 Score E Sequences producing significant alignments: (Bits) Value seq1201 147 2e-33 seq583 138 8e-31 seq412 120 2e-25 seq400 80.6 2e-13 >seq1201 Length=1307 Score = 147 bits (162), Expect = 2e-33 Identities = 105/121 (87%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||||||||| | ||||||| |||||||| Sbjct 902 TACGGCTACCTTGTTACGACTTCACCCCAGTCATGAATCCTACCGTGGTAATCGCCCTCC 961 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 | ||||| |||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 962 TTACGGTTAGGCTAACTACTTCTGGTAAAACCCACTCCCATGGTGTGACGGGCGGTGTGT 1021 Query 138 A 138 | Sbjct 1022 A 1022 >seq583 Length=3271 Score = 138 bits (152), Expect = 8e-31 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | | |||||||||||||||| Sbjct 2348 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCCGCCGTGGTAAGCGCCCTCC 2407 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 | ||||| ||||||||||||| | |||| |||||||||||||||||||||||||| Sbjct 2408 TTACGGTTAGGCTACCTACTTCTGGCGAGACCCGCTCCCATGGTGTGACGGGCGGTGTGT 2467 Query 138 A 138 | Sbjct 2468 A 2468 >seq412 Length=5103 Score = 120 bits (132), Expect = 2e-25 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 18 TACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCC 77 ||||| ||||||||| ||||||||||||||||| ||| | ||||||| |||||||| Sbjct 4306 TACGGCTACCTTGTTACGACTTCACCCCAGTCACGAACCCTGCCGTGGTAATCGCCCTCC 4365 Query 78 CGAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGGTGTGT 137 ||||| |||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 4366 TTGCGGTTAGGCTAACTACTTCTGGCAGAACCCGCTCCCATGGTGTGACGGGCGGTGTGT 4425 Query 138 A 138 | Sbjct 4426 A 4426 >seq400 Length=5312 Score = 80.6 bits (88), Expect = 2e-13 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 15 CCCTACGGTTACCTTGTTTCGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCC 74 |||||||| ||||||||| |||||||||||||||| | | | ||||| || || Sbjct 776 CCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCTGACCCTACCGTGGTCGGCTGCC 835 Query 75 TCCC--GAAGGTTAAGCTACCTACTTCTTTTGCAACCCACTCCCATGGTGTGACGGGCGG 132 ||| | ||||| ||| |||| | |||| |||||||||||||||||||||| Sbjct 836 TCCATTGCTGGTTAGCGCACCGCCTTCGGGTAGAACCAACTCCCATGGTGTGACGGGCGG 895 Query 133 TGTGTA 138 |||||| Sbjct 896 TGTGTA 901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345594135600