Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq194 102 1e-19 seq394 87.8 3e-15 >seq194 Length=13415 Score = 102 bits (112), Expect = 1e-19 Identities = 178/253 (70%), Gaps = 17/253 (7%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT---GCTCGAATACATTAG 127 ||| |||||||||| |||| |||| ||||||| || | || | | ||||| | || Sbjct 12239 ACTGTTACTTTGAATAAATCAGAGGGTTCAAACCAAACAATTTATGTTTGAATATTTCAG 12180 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT-TGGTTTCTAGGACCGCCGTAA 186 |||||||||| | |||||| | || || ||||||| | | | | | Sbjct 12179 CATGGAATAACACTATAGGAAAAG---------TTAGTGTGGTTTC-ACTATCTTTTTCA 12130 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 || |||||||| | | |||||| | |||| || |||||||||||||||||| Sbjct 12129 TGGTTAATAGGAACAAACGGGGGCATTCGTATCGCTACGTTAGAGGTGAAATTCTTGGAC 12070 Query 247 T-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 || || ||| ||||||||||||| || ||||| |||||||||||||||| ||| Sbjct 12069 CGTAGCGA-GACGTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 12012 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 12011 CGAAAGTTAGAGG 11999 >seq394 Length=5398 Score = 87.8 bits (96), Expect = 3e-15 Identities = 102/134 (76%), Gaps = 3/134 (2%) Strand=Plus/Plus Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||| |||||||| | | |||||| | |||| || |||||||||||||||||| Sbjct 1454 ATGGTTAATAGGAACAAACGGGGGCATTCGTATCGCTACGTTAGAGGTGAAATTCTTGGA 1513 Query 246 TT-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 || || ||| ||||||||||||| || ||||| |||||||||||||||| || Sbjct 1514 CCGTAGCGA-GACGTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGA 1571 Query 305 ACGAAAGTTAGGGG 318 ||||||||||| || Sbjct 1572 ACGAAAGTTAGAGG 1585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915183434880