Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq194 113 2e-22 >seq194 Length=13415 Score = 113 bits (124), Expect = 2e-22 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||| | ||||| ||| |||| |||| |||| || Sbjct 9907 TGCGACCCGAAAGATGGTGAACTATGCTAGCGCAGGGTAAAGTCAGAAGAAATTCTGATG 9848 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||||| ||| ||||||||||| ||||| | | |||||||||||| Sbjct 9847 GAAGCTCGAAGCGGTCCTGACGTGCAAATCGGTCGTCTGACGTTAGTATAGGGGCGA 9791 Score = 96.9 bits (106), Expect = 1e-17 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || | || | |||| || ||||| ||||||| Sbjct 10508 GAGTCGTGTTGCTTGGAAGTGCAGCGCAAAGTTGGTGATAAACATCATCTAAGGCTAAAT 10449 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || ||||||||| ||||||| |||| |||| || |||| ||| ||| Sbjct 10448 ATCCCTATGAATCCGATAGCGAACAAGTACTGTGAAGGAAAATTGCAAAGTACTCCGGAG 10389 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 10388 AGAGAGTTAAAGAGGACGTGAAA 10366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079961175500