Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq412 127 2e-27 seq583 118 1e-24 >seq412 Length=5103 Score = 127 bits (140), Expect = 2e-27 Identities = 137/178 (77%), Gaps = 9/178 (5%) Strand=Plus/Plus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| |||||||| ||||||| ||| |||| |||| ||||| ||||| Sbjct 1593 CTGAAGCTTAGGAGCTTTTCCTGGAAGCGTGGTATCAGTGACTTTGTCAT---AAAGA-- 1647 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 |||||| || | | ||| |||| | ||||||||||| || ||||| | | |||||| Sbjct 1648 -CTCGTC-TCGGTGCTCGGTCTTAAAGGATCCCGGATTTGCCAAAGATCCAAACCTACCG 1705 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||| | |||||||||||||| | |||| |||||||||||||||||||||| Sbjct 1706 CCTTTCCCCAGGACAACCAACGCCTGGTACACCTAACCTTCTCCGTCCCTCCATCGCA 1763 >seq583 Length=3271 Score = 118 bits (130), Expect = 1e-24 Identities = 85/98 (87%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 88 AGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCA 147 || ||||||||||| || ||||| | | |||||| |||| | ||||||||||||||| Sbjct 4 AGGATCCCGGATTTGCCAAAGATCCAAACCTACCGCCTTTCCCCAGGACAACCAACGCCA 63 Query 148 AGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAAC 185 ||||||||||||||||||||||||||||||||| |||| Sbjct 64 AGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCACTAAC 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518390910180