Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000345.1
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
seq412 127 2e-27
seq583 118 1e-24
>seq412
Length=5103
Score = 127 bits (140), Expect = 2e-27
Identities = 137/178 (77%), Gaps = 9/178 (5%)
Strand=Plus/Plus
Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64
||||||||||| |||||||| ||||||| ||| |||| |||| ||||| |||||
Sbjct 1593 CTGAAGCTTAGGAGCTTTTCCTGGAAGCGTGGTATCAGTGACTTTGTCAT---AAAGA-- 1647
Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122
|||||| || | | ||| |||| | ||||||||||| || ||||| | | ||||||
Sbjct 1648 -CTCGTC-TCGGTGCTCGGTCTTAAAGGATCCCGGATTTGCCAAAGATCCAAACCTACCG 1705
Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180
|||| | |||||||||||||| | |||| ||||||||||||||||||||||
Sbjct 1706 CCTTTCCCCAGGACAACCAACGCCTGGTACACCTAACCTTCTCCGTCCCTCCATCGCA 1763
>seq583
Length=3271
Score = 118 bits (130), Expect = 1e-24
Identities = 85/98 (87%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 88 AGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCA 147
|| ||||||||||| || ||||| | | |||||| |||| | |||||||||||||||
Sbjct 4 AGGATCCCGGATTTGCCAAAGATCCAAACCTACCGCCTTTCCCCAGGACAACCAACGCCA 63
Query 148 AGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAAC 185
||||||||||||||||||||||||||||||||| ||||
Sbjct 64 AGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCACTAAC 101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518390910180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |