Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq1594 161 9e-38
seq1201 107 2e-21
seq583 100 3e-19
seq1299 96.9 3e-18
seq365 93.3 4e-17
seq1583 86.0 6e-15
seq412 86.0 6e-15
>seq1594
Length=749
Score = 161 bits (178), Expect = 9e-38
Identities = 104/114 (91%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60
|||| |||| |||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct 409 GGCACACGGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGACGTGATAAGCTGCGAAAAG 350
Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| |||||||||||||| ||||| ||||||| ||||||| ||||||||||||||
Sbjct 349 CTGCGGGGATTGGCACACACGAAGTGATCCGCAGATATCTGAATGGGGCAACCC 296
>seq1201
Length=1307
Score = 107 bits (118), Expect = 2e-21
Identities = 93/114 (82%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| | ||||||||||| ||| || |||||| ||||||||| || |||||||||||
Sbjct 223 GCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAAAGC 164
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|||||||| ||||| | | | ||||||||||||| ||||||||||| |||||
Sbjct 163 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC 110
>seq583
Length=3271
Score = 100 bits (110), Expect = 3e-19
Identities = 138/193 (72%), Gaps = 20/193 (10%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| ||| |||||| || |||||| ||||
Sbjct 1486 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGC 1427
Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114
| |||||| | |||| | | |||||||| |||| || |||||||| |||||
Sbjct 1426 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACCTGG 1367
Query 115 -------GATATATTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTG 167
| ||| || | ||| |||| || || |||||||| |||||||||
Sbjct 1366 CAAGTCAGGTATCTTTGCTGAATA-CATAGGGCAAG-----AGGCGAACCAGGGGAACTG 1313
Query 168 AAACATCTAAGTA 180
|||||||||||||
Sbjct 1312 AAACATCTAAGTA 1300
>seq1299
Length=1159
Score = 96.9 bits (106), Expect = 3e-18
Identities = 137/188 (73%), Gaps = 21/188 (11%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| ||||
Sbjct 557 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 616
Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------------ 114
|| ||||| ||| | |||||||| |||| || |||||||| |||||
Sbjct 617 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACCTGCAAGTCA 676
Query 115 GATATATTGGA--GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACA 172
| ||| ||| | || ||| |||| | | || |||||||| ||||||||||||||
Sbjct 677 GGTATCTTGTACTGA-ATA-CATA--GGT--GCAAGAGGCGAACCAGGGGAACTGAAACA 730
Query 173 TCTAAGTA 180
||||||||
Sbjct 731 TCTAAGTA 738
>seq365
Length=5917
Score = 93.3 bits (102), Expect = 4e-17
Identities = 93/116 (80%), Gaps = 5/116 (4%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60
||| ||||||||||||| ||| ||| |||| ||||||||||||| ||| |||||| |||
Sbjct 1819 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTCGTAATCTGCGATAAG 1761
Query 61 CTACGGGGATTGGCACATACGAA--TTGATCCGTAGATATCCGAATGGGGCAACCC 114
| |||||| | | | | ||||| ||||||| ||| ||||||||||| |||||
Sbjct 1760 CCTCGGGGAGTTG-ATAAACGAACTGTGATCCGAGGATTTCCGAATGGGGAAACCC 1706
>seq1583
Length=772
Score = 86.0 bits (94), Expect = 6e-15
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| |||||||||| | ||||||||||
Sbjct 391 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 332
Query 62 TACGGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|||||| ||||| | | | |||||||| || ||||||||||| |||||
Sbjct 331 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 279
>seq412
Length=5103
Score = 86.0 bits (94), Expect = 6e-15
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61
||| ||||||||||||| ||| || ||||||| |||||||||| | ||||||||||
Sbjct 3656 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 3597
Query 62 TACGGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|||||| ||||| | | | |||||||| || ||||||||||| |||||
Sbjct 3596 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 3544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476791639610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |