Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq1594 161 9e-38 seq1201 107 2e-21 seq583 100 3e-19 seq1299 96.9 3e-18 seq365 93.3 4e-17 seq1583 86.0 6e-15 seq412 86.0 6e-15 >seq1594 Length=749 Score = 161 bits (178), Expect = 9e-38 Identities = 104/114 (91%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 1 GGCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 |||| |||| |||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct 409 GGCACACGGGGGATGCCTAGGCTCTCAGAGGCGATGAAAGACGTGATAAGCTGCGAAAAG 350 Query 61 CTACGGGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || |||||||||||||| ||||| ||||||| ||||||| |||||||||||||| Sbjct 349 CTGCGGGGATTGGCACACACGAAGTGATCCGCAGATATCTGAATGGGGCAACCC 296 >seq1201 Length=1307 Score = 107 bits (118), Expect = 2e-21 Identities = 93/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| || |||||| ||||||||| || ||||||||||| Sbjct 223 GCATATGGTGGATGCCTTGGCGATCACAGGCGATGAAGGACGTAGTAGCCTGCGAAAAGC 164 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||||| ||||| | | | ||||||||||||| ||||||||||| ||||| Sbjct 163 TACGGGGAGCTGGCAAACAAGCTTTGATCCGTAGATGTCCGAATGGGGAAACCC 110 >seq583 Length=3271 Score = 100 bits (110), Expect = 3e-19 Identities = 138/193 (72%), Gaps = 20/193 (10%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| ||| |||||| || |||||| |||| Sbjct 1486 GCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGATAAGC 1427 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------ 114 | |||||| | |||| | | |||||||| |||| || |||||||| ||||| Sbjct 1426 TTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATCTCTGAATGGGGGAACCCACCTGG 1367 Query 115 -------GATATATTGGAGATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTG 167 | ||| || | ||| |||| || || |||||||| ||||||||| Sbjct 1366 CAAGTCAGGTATCTTTGCTGAATA-CATAGGGCAAG-----AGGCGAACCAGGGGAACTG 1313 Query 168 AAACATCTAAGTA 180 ||||||||||||| Sbjct 1312 AAACATCTAAGTA 1300 >seq1299 Length=1159 Score = 96.9 bits (106), Expect = 3e-18 Identities = 137/188 (73%), Gaps = 21/188 (11%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||| ||||||||| |||||| ||||| |||| Sbjct 557 GGTGGATGCCTTGGCGATGATAGGCGACGAAAGACGTGATAGCCTGCGATAAGCTTCGGG 616 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC------------ 114 || ||||| ||| | |||||||| |||| || |||||||| ||||| Sbjct 617 GAGCTGGCAAATAAGCTTTGATCCGGAGATTTCTGAATGGGGAAACCCACCTGCAAGTCA 676 Query 115 GATATATTGGA--GATATATCATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACA 172 | ||| ||| | || ||| |||| | | || |||||||| |||||||||||||| Sbjct 677 GGTATCTTGTACTGA-ATA-CATA--GGT--GCAAGAGGCGAACCAGGGGAACTGAAACA 730 Query 173 TCTAAGTA 180 |||||||| Sbjct 731 TCTAAGTA 738 >seq365 Length=5917 Score = 93.3 bits (102), Expect = 4e-17 Identities = 93/116 (80%), Gaps = 5/116 (4%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGC-TCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAG 60 ||| ||||||||||||| ||| ||| |||| ||||||||||||| ||| |||||| ||| Sbjct 1819 GCAAACGGTGGATGCCTTGGCATCT-GGAGCCGAAGAAGGACGTCGTAATCTGCGATAAG 1761 Query 61 CTACGGGGATTGGCACATACGAA--TTGATCCGTAGATATCCGAATGGGGCAACCC 114 | |||||| | | | | ||||| ||||||| ||| ||||||||||| ||||| Sbjct 1760 CCTCGGGGAGTTG-ATAAACGAACTGTGATCCGAGGATTTCCGAATGGGGAAACCC 1706 >seq1583 Length=772 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 391 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 332 Query 62 TACGGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 331 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 279 >seq412 Length=5103 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 3656 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 3597 Query 62 TACGGGGAT-TGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 3596 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 3544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476791639610