Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq400 338 2e-90 seq365 329 8e-88 seq583 307 3e-81 seq819 295 2e-77 seq1775 91.5 4e-16 seq902 82.4 2e-13 >seq400 Length=5312 Score = 338 bits (374), Expect = 2e-90 Identities = 324/411 (79%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 1784 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 1725 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||| | ||| |||||| | |||| ||| || Sbjct 1724 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTCAGAGGT 1665 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181 |||||||| ||||| |||| |||| ||| |||| |||| ||| || |||| || || Sbjct 1664 GAAATCCCAGGGCTCAACCCTGGAACTGCCTTTGATACTGG-CGATCTTGAGTATGAGAG 1606 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| || Sbjct 1605 AGGTATGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTG 1546 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||| | |||| | ||||||||| | || ||||||||||||||||||||| Sbjct 1545 GCGAAGGCGACATACTGGCTCATTACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 1486 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG---GGATT 358 ||||||||||||||||||||||||||| |||||||| |||||||| || | || Sbjct 1485 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGCTGCATG 1426 Query 359 TACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||| ||| ||| ||||||||| | ||| ||||||||||| ||| Sbjct 1425 CAGTTC---GGTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTAC 1378 >seq365 Length=5917 Score = 329 bits (364), Expect = 8e-88 Identities = 325/414 (79%), Gaps = 11/414 (3%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3363 TACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 3304 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121 ||||||| |||||||| ||||||||||| | || |||||| | ||| | | | || Sbjct 3303 AAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCT-TGTCGCGTCTGCTG 3245 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCA 180 ||||| ||| |||| ||||| || |||| | | || | || | |||||||| | | Sbjct 3244 TGAAAACCCGAGGCTCAACCTCGGGCCTGCAGTGGGTACGGGCAAG-CTAGAGTGCGGTA 3186 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | ||||||||| ||||||| |||||||||| |||||| ||||||||||| || Sbjct 3185 GGGGAGATTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGAT 3126 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||||| | ||||| ||||||||| | | ||||||| |||||||| ||| Sbjct 3125 GGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAAC 3066 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360 |||||||||||||||||||||||| ||| |||||| | |||||| ||| ||| | | Sbjct 3065 AGGATTAGATACCCTGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTT 3006 Query 361 C-----TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || || |||||||||||| | ||||| ||||||||||| ||| Sbjct 3005 CCACGGTTTCT--GTGTCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTAC 2954 >seq583 Length=3271 Score = 307 bits (340), Expect = 3e-81 Identities = 206/230 (90%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| | Sbjct 3191 AGAGGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGA 3132 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 3131 TGGCGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 3072 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTT 359 |||||||||||||||||||||||||||||||||||||| |||| | ||||||| ||| Sbjct 3071 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGTTGGGAATTA 3012 Query 360 ACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| || |||||| |||||||||||||||||||||||||||||| ||| Sbjct 3011 ACTTTCTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 2962 >seq819 Length=2095 Score = 295 bits (326), Expect = 2e-77 Identities = 313/411 (76%), Gaps = 10/411 (2%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||| | | Sbjct 504 TACCTGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 563 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| ||| |||| ||||| ||||| |||||| | |||| ||| || Sbjct 564 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCCTATAAGTCAGTGGT 623 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||| | ||||||| | | ||| |||| |||| | |||| || | | | || Sbjct 624 GAAAGACGGCAGCTTAACTGTCGCAGTGCCTTTGATACTGTAGGACTTGAATCTATTTGA 683 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | ||| ||||| || ||||| ||||||||| ||||||||| ||||||| || | Sbjct 684 AGTGGGCGGAATAAGACAAGTAGCGGTGAAATGCATAGATATGTCTTAGAACACCGATTG 743 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||||||||| | || | || | ||||||| ||||||||||||||||||| | ||||| Sbjct 744 CGAAGGCAGCTCACTAAGTTATTATTGACGCTGATGCACGAAAGCGTGGGGATCGAACAG 803 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||||||||||||||||||||||||||||| |||| | |||| | ||| || Sbjct 804 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGTTTGCGATACAC- 862 Query 363 TCCTTGGTAA-CGT---AGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 |||| ||| ||| || |||| ||||| || |||||||| ||| Sbjct 863 -----AGTAAGCGTCCAAGCGAAAGCGTTAAGTTATCCACCTGGGGAGTAC 908 Score = 118 bits (130), Expect = 3e-24 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1174 TGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAGTCCACGC 1233 Query 328 CCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGTAACGTAGCTAACGCGTG 387 |||||||||| ||| | |||| | ||| ||| || | | ||| || |||| Sbjct 1234 CCTAAACGATGAATACTCGCTGTTAGCGATATAC--AGTTAGCGGCTAAGCGAAAGCGTT 1291 Query 388 AAGTTGACCGCCTGGGGAATAC 409 |||| || |||||||| ||| Sbjct 1292 AAGTATTCCACCTGGGGAGTAC 1313 Score = 116 bits (128), Expect = 1e-23 Identities = 78/87 (90%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 975 TGACGCTGAGGCACGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGC 1034 Query 328 CCTAAACGATATCAACTAGTTGTTGGG 354 | |||||||| |||| ||| ||||| Sbjct 1035 CGTAAACGATGCTAACTCGTTTTTGGG 1061 >seq1775 Length=549 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65 ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 495 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAG 549 >seq902 Length=1850 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||| | ||||||||| |||||||||||||||||||||||| ||| | | Sbjct 73 TACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 14 Query 63 AAGCGTTA 70 |||||||| Sbjct 13 AAGCGTTA 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289576658240