Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq400 338 2e-90
seq365 329 8e-88
seq583 307 3e-81
seq819 295 2e-77
seq1775 91.5 4e-16
seq902 82.4 2e-13
>seq400
Length=5312
Score = 338 bits (374), Expect = 2e-90
Identities = 324/411 (79%), Gaps = 8/411 (2%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| | |||| |||| |||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 1784 TACCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGC 1725
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||| ||||||||||||||||||||| | ||| |||||| | |||| ||| ||
Sbjct 1724 TAGCGTTGCTCGGAATTACTGGGCGTAAAGGGCGCGTAGGCGGATCGTTAAGTCAGAGGT 1665
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAG 181
|||||||| ||||| |||| |||| ||| |||| |||| ||| || |||| || ||
Sbjct 1664 GAAATCCCAGGGCTCAACCCTGGAACTGCCTTTGATACTGG-CGATCTTGAGTATGAGAG 1606
Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241
||| |||||| ||| |||||| ||||||| ||||||||| ||| |||||||| ||
Sbjct 1605 AGGTATGTGGAACTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTG 1546
Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
|||||||| | |||| | ||||||||| | || |||||||||||||||||||||
Sbjct 1545 GCGAAGGCGACATACTGGCTCATTACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 1486
Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG---GGATT 358
||||||||||||||||||||||||||| |||||||| |||||||| || | ||
Sbjct 1485 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATTGCTAGTTGTCGGGCTGCATG 1426
Query 359 TACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| ||| ||| ||| ||||||||| | ||| ||||||||||| |||
Sbjct 1425 CAGTTC---GGTGACGCAGCTAACGCATTAAGCAATCCGCCTGGGGAGTAC 1378
>seq365
Length=5917
Score = 329 bits (364), Expect = 8e-88
Identities = 325/414 (79%), Gaps = 11/414 (3%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3363 TACCTGCAGAAAAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 3304
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAA-GACAGGTG 121
||||||| |||||||| ||||||||||| | || |||||| | ||| | | | ||
Sbjct 3303 AAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCTCGTAGGCGGCT-TGTCGCGTCTGCTG 3245
Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCA 180
||||| ||| |||| ||||| || |||| | | || | || | |||||||| | |
Sbjct 3244 TGAAAACCCGAGGCTCAACCTCGGGCCTGCAGTGGGTACGGGCAAG-CTAGAGTGCGGTA 3186
Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240
| || | ||||||||| ||||||| |||||||||| |||||| ||||||||||| ||
Sbjct 3185 GGGGAGATTGGAATTCCTGGTGTAGCGGTGAAATGCGCAGATATCAGGAGGAACACCGAT 3126
Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300
||||||||||| | ||||| ||||||||| | | ||||||| |||||||| |||
Sbjct 3125 GGCGAAGGCAGATCTCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAAC 3066
Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTA 360
|||||||||||||||||||||||| ||| |||||| | |||||| ||| ||| | |
Sbjct 3065 AGGATTAGATACCCTGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTT 3006
Query 361 C-----TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| || || || |||||||||||| | ||||| ||||||||||| |||
Sbjct 3005 CCACGGTTTCT--GTGTCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTAC 2954
>seq583
Length=3271
Score = 307 bits (340), Expect = 3e-81
Identities = 206/230 (90%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239
|||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 3191 AGAGGGGGATGGAATTCCGCGTGTAGCAGTGAAATGCGTAGATATGCGGAGGAACACCGA 3132
Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3131 TGGCGAAGGCAATCCCCTGGACCTGTACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 3072
Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTT 359
|||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||
Sbjct 3071 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATGCGAACTGGATGTTGGGAATTA 3012
Query 360 ACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|||| || |||||| |||||||||||||||||||||||||||||| |||
Sbjct 3011 ACTTTCTCAGTAACGAAGCTAACGCGTGAAGTTGACCGCCTGGGGAGTAC 2962
>seq819
Length=2095
Score = 295 bits (326), Expect = 2e-77
Identities = 313/411 (76%), Gaps = 10/411 (2%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
||||||||||||||| | ||||||||| |||||||||||||||||||||||| ||| | |
Sbjct 504 TACCTGAAGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 563
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||| ||| |||| ||||| ||||| |||||| | |||| ||| ||
Sbjct 564 AAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCCCTATAAGTCAGTGGT 623
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
|||| | ||||||| | | ||| |||| |||| | |||| || | | | ||
Sbjct 624 GAAAGACGGCAGCTTAACTGTCGCAGTGCCTTTGATACTGTAGGACTTGAATCTATTTGA 683
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
| ||| ||||| || ||||| ||||||||| ||||||||| ||||||| || |
Sbjct 684 AGTGGGCGGAATAAGACAAGTAGCGGTGAAATGCATAGATATGTCTTAGAACACCGATTG 743
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||||||||| | || | || | ||||||| ||||||||||||||||||| | |||||
Sbjct 744 CGAAGGCAGCTCACTAAGTTATTATTGACGCTGATGCACGAAAGCGTGGGGATCGAACAG 803
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
||||||||||||||||||||||||||||||||||| |||| | |||| | ||| ||
Sbjct 804 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATGATAACTCGATGTTTGCGATACAC- 862
Query 363 TCCTTGGTAA-CGT---AGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|||| ||| ||| || |||| ||||| || |||||||| |||
Sbjct 863 -----AGTAAGCGTCCAAGCGAAAGCGTTAAGTTATCCACCTGGGGAGTAC 908
Score = 118 bits (130), Expect = 3e-24
Identities = 112/142 (79%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1174 TGACGCTGAGGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGGTAGTCCACGC 1233
Query 328 CCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGTAACGTAGCTAACGCGTG 387
|||||||||| ||| | |||| | ||| ||| || | | ||| || ||||
Sbjct 1234 CCTAAACGATGAATACTCGCTGTTAGCGATATAC--AGTTAGCGGCTAAGCGAAAGCGTT 1291
Query 388 AAGTTGACCGCCTGGGGAATAC 409
|||| || |||||||| |||
Sbjct 1292 AAGTATTCCACCTGGGGAGTAC 1313
Score = 116 bits (128), Expect = 1e-23
Identities = 78/87 (90%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 975 TGACGCTGAGGCACGAAAGCGTGGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGC 1034
Query 328 CCTAAACGATATCAACTAGTTGTTGGG 354
| |||||||| |||| ||| |||||
Sbjct 1035 CGTAAACGATGCTAACTCGTTTTTGGG 1061
>seq1775
Length=549
Score = 91.5 bits (100), Expect = 4e-16
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAG 65
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 495 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAG 549
>seq902
Length=1850
Score = 82.4 bits (90), Expect = 2e-13
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| | ||||||| | ||||||||| |||||||||||||||||||||||| ||| | |
Sbjct 73 TACCGAAGGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCC 14
Query 63 AAGCGTTA 70
||||||||
Sbjct 13 AAGCGTTA 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289576658240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |