Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq555 154 2e-35
seq412 152 7e-35
seq1688 131 2e-28
>seq555
Length=3447
Score = 154 bits (170), Expect = 2e-35
Identities = 183/249 (73%), Gaps = 23/249 (9%)
Strand=Plus/Plus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| ||||||| ||||||||||| ||||| || ||||| || ||| | | || |||
Sbjct 1816 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTTCGATTTT-GCAG 1874
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| ||||||||||| ||||||||||| | || ||| ||||| ||
Sbjct 1875 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGGCC------------ 1922
Query 121 ACACGTCGTTCACCAGCAGTGG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179
||| ||| | |||| | ||||||||||||||||||| |||| ||||||||||
Sbjct 1923 -CACATCGCT--------GTGGGCGCCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGA 1973
Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239
||||||| ||| ||||| ||| | |||||| ||||||| | |||||||||||||||
Sbjct 1974 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGATTCTCTCCTCGACCACCTGTGTCGG 2033
Query 240 TTTACGGTA 248
||| |||||
Sbjct 2034 TTTGCGGTA 2042
>seq412
Length=5103
Score = 152 bits (168), Expect = 7e-35
Identities = 187/250 (75%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61
||| ||||||| |||||||||||||||| || ||||| || |||| | || || |||
Sbjct 1331 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1389
Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121
| |||||||||| ||||||||||| | || | |||||||| | ||||| |
Sbjct 1390 GTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCTATA 1449
Query 122 -CACGT-CGTTC-ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178
| || || | |||| | || | ||||||||||||||||||| ||||| |||||
Sbjct 1450 GCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCT 1509
Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238
| |||||| ||| ||||| | | | ||||| || |||||| ||| ||||||||||||
Sbjct 1510 AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCCACCTGTGTCG 1569
Query 239 GTTTACGGTA 248
||||||||||
Sbjct 1570 GTTTACGGTA 1579
>seq1688
Length=639
Score = 131 bits (144), Expect = 2e-28
Identities = 161/217 (74%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66
|||||| |||||||||||||||| || ||||| || |||| ||| || ||| | ||
Sbjct 421 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCT 479
Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126
||||||||| ||||||||||| || | ||||| ||| ||| | ||||| | ||
Sbjct 480 GTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACCCCGTTTAGCTCCATTTGT 539
Query 127 ---CGTTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182
||||| | | ||||| ||||||||||||||||||| | || |||||||| ||
Sbjct 540 ACAACTTCACTTACTTGCGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGCCGAGTT 599
Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTC 219
|||| ||| ||||| | | | |||||||| || |||
Sbjct 600 CCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694387824130
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |