Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq555 154 2e-35 seq412 152 7e-35 seq1688 131 2e-28 >seq555 Length=3447 Score = 154 bits (170), Expect = 2e-35 Identities = 183/249 (73%), Gaps = 23/249 (9%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || ||||| || ||| | | || ||| Sbjct 1816 CTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTTCGATTTT-GCAG 1874 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || ||| ||||| || Sbjct 1875 AGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGGCC------------ 1922 Query 121 ACACGTCGTTCACCAGCAGTGG-CACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 ||| ||| | |||| | ||||||||||||||||||| |||| |||||||||| Sbjct 1923 -CACATCGCT--------GTGGGCGCCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGA 1973 Query 180 ATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGG 239 ||||||| ||| ||||| ||| | |||||| ||||||| | ||||||||||||||| Sbjct 1974 GTTCCTTAGCCATGATTCACTCGAGCACCTTAGGATTCTCTCCTCGACCACCTGTGTCGG 2033 Query 240 TTTACGGTA 248 ||| ||||| Sbjct 2034 TTTGCGGTA 2042 >seq412 Length=5103 Score = 152 bits (168), Expect = 7e-35 Identities = 187/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 1331 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1389 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| | || | |||||||| | ||||| | Sbjct 1390 GTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCTATA 1449 Query 122 -CACGT-CGTTC-ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | || || | |||| | || | ||||||||||||||||||| ||||| ||||| Sbjct 1450 GCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCT 1509 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| ||| ||||| | | | ||||| || |||||| ||| |||||||||||| Sbjct 1510 AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCCACCTGTGTCG 1569 Query 239 GTTTACGGTA 248 |||||||||| Sbjct 1570 GTTTACGGTA 1579 >seq1688 Length=639 Score = 131 bits (144), Expect = 2e-28 Identities = 161/217 (74%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| ||| || ||| | || Sbjct 421 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGAGTGCT 479 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| || | ||||| ||| ||| | ||||| | || Sbjct 480 GTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACCCCGTTTAGCTCCATTTGT 539 Query 127 ---CGTTCAC-CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 ||||| | | ||||| ||||||||||||||||||| | || |||||||| || Sbjct 540 ACAACTTCACTTACTTGCGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGCCGAGTT 599 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTC 219 |||| ||| ||||| | | | |||||||| || ||| Sbjct 600 CCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACTC 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694387824130