Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq555 147 2e-33 >seq555 Length=3447 Score = 147 bits (162), Expect = 2e-33 Identities = 139/175 (79%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || |||| | || || |||||| ||| |||||||||| || || Sbjct 2039 CGCAAACCGACACAGGTGGTCGAGGAGAGAATCCTAAGGTGCTCGAGTGAATCATGGCTA 1980 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | |||||||||||||||| || ||| || | ||| ||| | Sbjct 1979 AGGAACTCGGCAAAATAGCCCTGTAACTTCGGGAGAAGGGGCGCC--CACAGCGATGTG- 1923 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||| ||| ||| |||||| |||||||| ||||||||||||||| ||| || Sbjct 1922 GGCCGCAGTGAAAAGGCCCAGGCGACTGTTTATCAAAAACACAGGGCTCTGCAAA 1868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531190685740