Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq412 179 4e-43 seq1688 152 5e-35 seq555 100 3e-19 >seq412 Length=5103 Score = 179 bits (198), Expect = 4e-43 Identities = 107/112 (96%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1436 GGTCGCAGTAACCAGGCCGCTGCGACTGTTTATCAAAAACACAGCACTCTGCAAACACGA 1377 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1376 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAATTGATG 1325 >seq1688 Length=639 Score = 152 bits (168), Expect = 5e-35 Identities = 90/94 (96%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 503 GCTGCGACTGTTTAATAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 444 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| ||||| |||| ||||| Sbjct 443 TGACGCCTGCCCGGTGCTGGAAGATTAAATGATG 410 >seq555 Length=3447 Score = 100 bits (110), Expect = 3e-19 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| |||||||||||| |||||||||| ||||||||| |||||| || ||||| Sbjct 1909 AGGCCCAGGCGACTGTTTATCAAAAACACAGGGCTCTGCAAAATCGAAAGATGAAGTATA 1850 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| |||| |||||||||||| |||||||||| Sbjct 1849 GGGCCTGACACCTGCCCGGTGCTGGAAGGTTAA 1817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476791639610