Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq412 549 5e-154
seq1688 426 4e-117
seq555 302 1e-79
seq196 89.7 1e-15
>seq412
Length=5103
Score = 549 bits (608), Expect = 5e-154
Identities = 377/422 (89%), Gaps = 5/422 (1%)
Strand=Plus/Plus
Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 ACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTG 1201
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1261
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAA 185
|||||| |||||||||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 1262 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGA 1321
Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 1381
Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305
||||||||||||||||||||| ||||||||||||||||||||||| || ||||| | |
Sbjct 1382 TTTGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTT 1441
Query 306 GAGCT-TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364
|||| || ||| | | |||| | || |||||||||||||||||||||||||
Sbjct 1442 CAGCTATAGCTCGCACGAGC--CACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGC 1499
Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424
| | ||||||||||||||| ||||||||||||||||||||| | |||||| || | ||
Sbjct 1500 CATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCC 1559
Query 425 AC 426
||
Sbjct 1560 AC 1561
>seq1688
Length=639
Score = 426 bits (472), Expect = 4e-117
Identities = 350/421 (83%), Gaps = 21/421 (5%)
Strand=Plus/Plus
Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60
||||| | | |||||| ||||| ||||||| ||| ||||||||| || ||||||||
Sbjct 231 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 290
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 350
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180
||||||||||||| |||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 351 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAGCTT-GC---- 405
Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 406 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 461
Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
||||||||||||||||||||||||||| |||||||||||||| || | | | | |||
Sbjct 462 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACC 521
Query 301 GGCATGAGCT---TACGGAGCAAGTCCTTCACCCTCAC---CGGCGCACCTTCTCCCGAA 354
| |||| | | | ||| ||||| || || |||| ||||||||||||||
Sbjct 522 CCGTTTAGCTCCATTTGTA-CAA---CTTCA--CTTACTTGCGGCACACCTTCTCCCGAA 575
Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414
||||||||| | |||||| ||||||||| || ||||||||||||||||||| | || ||
Sbjct 576 GTTACGGTGTCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACT 635
Query 415 C 415
|
Sbjct 636 C 636
>seq555
Length=3447
Score = 302 bits (334), Expect = 1e-79
Identities = 324/428 (76%), Gaps = 28/428 (7%)
Strand=Plus/Plus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60
|||| || | |||||||||| | | | ||||||||| ||| ||| || |||||||
Sbjct 1622 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCATGGCTGAGACAGT 1680
Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1740
Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179
||||||||||||| |||||||||||||||||| |||||||| |||| ||||||| ||
Sbjct 1741 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTG 1800
Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238
|||||| || | |||||||||| |||||||||||| |||| |||||||| || |
Sbjct 1801 CTGCTAACGCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATC 1860
Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298
||||| ||||||||| |||||||||| |||||||||||| ||||| | || ||
Sbjct 1861 TTTCGATTTTGCAGAGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGG 1920
Query 299 CCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTA 358
|| ||| ||| || ||||| ||||||||||||||||
Sbjct 1921 CCCACAT-CGCT----------GT-------------GGGCGCCCCTTCTCCCGAAGTTA 1956
Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| | || ||||||| |||||||| || ||| ||| ||| |||| | ||||||| |
Sbjct 1957 CAGGGCTATTTTGCCGAGTTCCTTAGCCATGATTCACTCGAGCACCTTAGGATTCTCTCC 2016
Query 419 CCAACCAC 426
| |||||
Sbjct 2017 TCGACCAC 2024
>seq196
Length=13323
Score = 89.7 bits (98), Expect = 1e-15
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
|||||| |||||||||| ||||||| ||||||||| ||| |||| ||||||||| ||
Sbjct 12651 TCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAG 12710
Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164
|| || ||||| ||||||||||| | ||||| ||
Sbjct 12711 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAAT 12747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260777179520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |