Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq412 549 5e-154 seq1688 426 4e-117 seq555 302 1e-79 seq196 89.7 1e-15 >seq412 Length=5103 Score = 549 bits (608), Expect = 5e-154 Identities = 377/422 (89%), Gaps = 5/422 (1%) Strand=Plus/Plus Query 8 ACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCA 67 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1142 ACGCTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTG 1201 Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1261 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT--AGCTAA 185 |||||| |||||||||||||||||| ||||||||||||||||||||||| || ||| | Sbjct 1262 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGA 1321 Query 186 CCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 245 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1322 CCCCATCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTG 1381 Query 246 TTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCAT 305 ||||||||||||||||||||| ||||||||||||||||||||||| || ||||| | | Sbjct 1382 TTTGCAGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTT 1441 Query 306 GAGCT-TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGC 364 |||| || ||| | | |||| | || ||||||||||||||||||||||||| Sbjct 1442 CAGCTATAGCTCGCACGAGC--CACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGC 1499 Query 365 CTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACC 424 | | ||||||||||||||| ||||||||||||||||||||| | |||||| || | || Sbjct 1500 CATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCC 1559 Query 425 AC 426 || Sbjct 1560 AC 1561 >seq1688 Length=639 Score = 426 bits (472), Expect = 4e-117 Identities = 350/421 (83%), Gaps = 21/421 (5%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| | | |||||| ||||| ||||||| ||| ||||||||| || |||||||| Sbjct 231 CGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGT 290 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 GTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 350 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA 180 ||||||||||||| |||||||||||||||||| |||||||| ||||||||||| || Sbjct 351 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAGCTT-GC---- 405 Query 181 GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 406 ----ACCCCATCATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 461 Query 241 TCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 ||||||||||||||||||||||||||| |||||||||||||| || | | | | ||| Sbjct 462 TCGTGTTTGCAGAGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACC 521 Query 301 GGCATGAGCT---TACGGAGCAAGTCCTTCACCCTCAC---CGGCGCACCTTCTCCCGAA 354 | |||| | | | ||| ||||| || || |||| |||||||||||||| Sbjct 522 CCGTTTAGCTCCATTTGTA-CAA---CTTCA--CTTACTTGCGGCACACCTTCTCCCGAA 575 Query 355 GTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCT 414 ||||||||| | |||||| ||||||||| || ||||||||||||||||||| | || || Sbjct 576 GTTACGGTGTCAATTTGCCGAGTTCCTTCTCCAGAGTTCTCTCAAGCGCCTTAGAATACT 635 Query 415 C 415 | Sbjct 636 C 636 >seq555 Length=3447 Score = 302 bits (334), Expect = 1e-79 Identities = 324/428 (76%), Gaps = 28/428 (7%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCG-GGTGGAGACAGC 60 |||| || | |||||||||| | | | ||||||||| ||| ||| || ||||||| Sbjct 1622 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG-CTCATGGCTGAGACAGT 1680 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1681 GCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1740 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT- 179 ||||||||||||| |||||||||||||||||| |||||||| |||| ||||||| || Sbjct 1741 TTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTG 1800 Query 180 -AGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 |||||| || | |||||||||| |||||||||||| |||| |||||||| || | Sbjct 1801 CTGCTAACGCCCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATC 1860 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGA 298 ||||| ||||||||| |||||||||| |||||||||||| ||||| | || || Sbjct 1861 TTTCGATTTTGCAGAGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGG 1920 Query 299 CCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTA 358 || ||| ||| || ||||| |||||||||||||||| Sbjct 1921 CCCACAT-CGCT----------GT-------------GGGCGCCCCTTCTCCCGAAGTTA 1956 Query 359 CGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | | || ||||||| |||||||| || ||| ||| ||| |||| | ||||||| | Sbjct 1957 CAGGGCTATTTTGCCGAGTTCCTTAGCCATGATTCACTCGAGCACCTTAGGATTCTCTCC 2016 Query 419 CCAACCAC 426 | ||||| Sbjct 2017 TCGACCAC 2024 >seq196 Length=13323 Score = 89.7 bits (98), Expect = 1e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| |||||||||| ||||||| ||||||||| ||| |||| ||||||||| || Sbjct 12651 TCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAG 12710 Query 128 CGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 || || ||||| ||||||||||| | ||||| || Sbjct 12711 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTTCAAT 12747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260777179520