Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq555 383 4e-104 seq412 269 6e-70 seq1688 230 5e-58 seq196 91.5 3e-16 seq1374 75.2 2e-11 >seq555 Length=3447 Score = 383 bits (424), Expect = 4e-104 Identities = 299/352 (85%), Gaps = 5/352 (1%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||||||| || | |||||||||||||| |||| Sbjct 1631 CGGCATCTTCACCGATACTACAATTTCACCGAGCTCATGGCTGAGACAGTGCCCAGATCG 1690 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1691 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1750 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGCT-CTAACAG 182 |||||||||||||||||||||||||||||| ||| | |||||| |||||| ||||| Sbjct 1751 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTGCTGCTAACGC 1810 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 ||||||||||||||||||||||||| ||||| ||||||| || |||| ||| || Sbjct 1811 CCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTTCGATTTT 1870 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 ||||| |||||||||||| ||||||||||| ||||||| ||| |||||||| ||| | Sbjct 1871 GCAGAGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGGCC-CACATCG 1929 Query 303 --ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 ||| ||||||||||| ||||||| ||| |||||||||||||||||| Sbjct 1930 CTGTGGGCGCCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTA 1981 >seq412 Length=5103 Score = 269 bits (298), Expect = 6e-70 Identities = 291/384 (76%), Gaps = 26/384 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | |||| ||||||||| |||||| || ||||||| ||| ||||| Sbjct 1147 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTGTCGTT 1206 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1266 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184 |||||||||||||||||||||||||||| | | |||||| |||| || || Sbjct 1267 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGACCCCA 1326 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | |||||||||||||||||||||||||||| ||||||| || ||| || || || Sbjct 1327 TCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 1386 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC------CTGTC 298 ||| ||||||||||| ||||||||||| ||||| | ||||| | | | Sbjct 1387 AGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCT 1446 Query 299 ATAG-----AC-AGGCACC------------CCTTCTCCCTAAGTTACGGGGTCATTTTG 340 |||| || || |||| ||||||||| ||||||||| | ||| ||| Sbjct 1447 ATAGCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTG 1506 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 || |||||||| || ||||||| Sbjct 1507 CCTAGTTCCTTCACCCGAGTTCTC 1530 >seq1688 Length=639 Score = 230 bits (254), Expect = 5e-58 Identities = 281/383 (73%), Gaps = 34/383 (9%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||| |||| ||| ||| ||| | |||||| | ||||||||| |||||| Sbjct 243 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 302 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 362 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||||||||||||||||||||||||| | | | || |||| | | || | Sbjct 363 TAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAGC-----TTGC---ACCCCAT-C 413 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||||||||||||||||||| ||||||| || ||| || || |||| Sbjct 414 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 473 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------------ 294 | |||||||||| ||||||||||| || ||||| ||| || Sbjct 474 AGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACCCCGTTTAGCTCC 533 Query 295 ---TGT-CA--TAGAC-------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 ||| || | || ||||| ||||||||| ||||||||| |||| ||||| Sbjct 534 ATTTGTACAACTTCACTTACTTGCGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGC 593 Query 342 CGAGTTCCTTAACAATAGTTCTC 364 |||||||||| | | ||||||| Sbjct 594 CGAGTTCCTTCTCCAGAGTTCTC 616 >seq196 Length=13323 Score = 91.5 bits (100), Expect = 3e-16 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121 |||||| || |||||||| ||||||| ||||||||| ||| |||| ||||||||| || Sbjct 12651 TCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAG 12710 Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154 || |||||||| ||||||||||| | |||| Sbjct 12711 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTT 12743 >seq1374 Length=1034 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || ||||| ||||||||| | |||||||||||||| || | |||||||| ||||| Sbjct 80 TAACCGGCGTCTTCACCGATACCACAATTTCACCGAGCTCATGGCTGAGACAGCGCCCAG 21 Query 61 ATCGTTACGCCTTTCGTGC 79 |||||||| || ||||||| Sbjct 20 ATCGTTACACCATTCGTGC 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062380770560