Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq555 383 4e-104
seq412 269 6e-70
seq1688 230 5e-58
seq196 91.5 3e-16
seq1374 75.2 2e-11
>seq555
Length=3447
Score = 383 bits (424), Expect = 4e-104
Identities = 299/352 (85%), Gaps = 5/352 (1%)
Strand=Plus/Plus
Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64
|||||||||||||| | ||||||||||||||| || | |||||||||||||| ||||
Sbjct 1631 CGGCATCTTCACCGATACTACAATTTCACCGAGCTCATGGCTGAGACAGTGCCCAGATCG 1690
Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124
|||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1750
Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGCT-CTAACAG 182
|||||||||||||||||||||||||||||| ||| | |||||| |||||| |||||
Sbjct 1751 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAGTCAAACGCTTCGCATTGCTGCTAACGC 1810
Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242
||||||||||||||||||||||||| ||||| ||||||| || |||| ||| ||
Sbjct 1811 CCTTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGGCCCTATACTTCATCTTTCGATTTT 1870
Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302
||||| |||||||||||| ||||||||||| ||||||| ||| |||||||| ||| |
Sbjct 1871 GCAGAGCCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTCACTGCGGCC-CACATCG 1929
Query 303 --ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352
||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct 1930 CTGTGGGCGCCCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAGTTCCTTA 1981
>seq412
Length=5103
Score = 269 bits (298), Expect = 6e-70
Identities = 291/384 (76%), Gaps = 26/384 (7%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | |||| ||||||||| |||||| || ||||||| ||| |||||
Sbjct 1147 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCTGTCGTT 1206
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1266
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG-ATTGC-TCTAACAGAT 184
|||||||||||||||||||||||||||| | | |||||| |||| || ||
Sbjct 1267 TAGTTACGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTGACCCCA 1326
Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244
| |||||||||||||||||||||||||||| ||||||| || ||| || || ||
Sbjct 1327 TCAATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 1386
Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGC------CTGTC 298
||| ||||||||||| ||||||||||| ||||| | ||||| | | |
Sbjct 1387 AGAGTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCT 1446
Query 299 ATAG-----AC-AGGCACC------------CCTTCTCCCTAAGTTACGGGGTCATTTTG 340
|||| || || |||| ||||||||| ||||||||| | ||| |||
Sbjct 1447 ATAGCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTG 1506
Query 341 CCGAGTTCCTTAACAATAGTTCTC 364
|| |||||||| || |||||||
Sbjct 1507 CCTAGTTCCTTCACCCGAGTTCTC 1530
>seq1688
Length=639
Score = 230 bits (254), Expect = 5e-58
Identities = 281/383 (73%), Gaps = 34/383 (9%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
||||| |||| ||| ||| ||| | |||||| | ||||||||| ||||||
Sbjct 243 GCATCATCACAAACATTTCAACTTCGCTGAGTCTCAGGAGGAGACAGTGTGGCCATCGTT 302
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 362
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
|||||||||||||||||||||||||||| | | | || |||| | | || |
Sbjct 363 TAGTTACGGCCGCCGTTTACTGGGGCTTCAATCAAGAGC-----TTGC---ACCCCAT-C 413
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| ||||||||||||||||||||||| ||||||| || ||| || || ||||
Sbjct 414 ATTTAATCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 473
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC------------ 294
| |||||||||| ||||||||||| || ||||| ||| ||
Sbjct 474 AGTGCTGTGTTTTTATTAAACAGTCGCAGCCACCGATTCTTTGCAACCCCGTTTAGCTCC 533
Query 295 ---TGT-CA--TAGAC-------AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341
||| || | || ||||| ||||||||| ||||||||| |||| |||||
Sbjct 534 ATTTGTACAACTTCACTTACTTGCGGCACACCTTCTCCCGAAGTTACGGTGTCAATTTGC 593
Query 342 CGAGTTCCTTAACAATAGTTCTC 364
|||||||||| | | |||||||
Sbjct 594 CGAGTTCCTTCTCCAGAGTTCTC 616
>seq196
Length=13323
Score = 91.5 bits (100), Expect = 3e-16
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 62 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 121
|||||| || |||||||| ||||||| ||||||||| ||| |||| ||||||||| ||
Sbjct 12651 TCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAG 12710
Query 122 CGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 154
|| |||||||| ||||||||||| | ||||
Sbjct 12711 AGTCATAGTTACTCCCGCCGTTTACAAGAGCTT 12743
>seq1374
Length=1034
Score = 75.2 bits (82), Expect = 2e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
|| ||||| ||||||||| | |||||||||||||| || | |||||||| |||||
Sbjct 80 TAACCGGCGTCTTCACCGATACCACAATTTCACCGAGCTCATGGCTGAGACAGCGCCCAG 21
Query 61 ATCGTTACGCCTTTCGTGC 79
|||||||| || |||||||
Sbjct 20 ATCGTTACACCATTCGTGC 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062380770560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |