Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq365 517 3e-144 seq583 484 2e-134 seq400 466 5e-129 seq819 394 3e-107 seq1201 134 4e-29 >seq365 Length=5917 Score = 517 bits (572), Expect = 3e-144 Identities = 418/500 (84%), Gaps = 8/500 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 2956 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 2897 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-GACCCCT 119 | || ||||||||| |||||||||||||||||||||| |||||||| | || | || Sbjct 2896 GCGGATTAATTCGATGCAACGCGAAGAACCTTACCAAGGCTTGACATAGCCGAGAACGCT 2837 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 |||||||| || || || || || || ||||||| |||||||||||||||| Sbjct 2836 GTAGAGATACAGAACTCT--TT--GGACACTCGGTTACAGGTGGTGCATGGTTGTCGTCA 2781 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2780 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTTG 2721 Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| || ||| | |||| |||| | ||||||| | ||| |||||||||||||| Sbjct 2720 CCAGCACGTTATGGTGGGAACTCATGGGATACTGCCGTGGTCAACACGGAGGAAGGTGGG 2661 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 || |||||||||||||||||||||||||| ||||||| ||| | ||||||||||| | | Sbjct 2660 GATGACGTCAAATCATCATGCCCCTTATGTCTTGGGCTTCACGCATGCTACAATGGCCGA 2601 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417 |||||||||| |||| |||||||||| ||| ||||||| ||||| | |||||||||||| Sbjct 2600 TACAAAGGGCTGCGATACCGCGAGGTGGAGCGAATCCCAAAAAGTCGGTCTCAGTTCGGA 2541 Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATG 476 ||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | | Sbjct 2540 TTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACG 2481 Query 477 CTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 2480 CTGCGGTGAATACGTTCCCG 2461 >seq583 Length=3271 Score = 484 bits (536), Expect = 2e-134 Identities = 409/498 (82%), Gaps = 11/498 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 2964 TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTAT 2905 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||||||||||||||||||| |||||||| || | || Sbjct 2904 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATGTCGAGAACTTTC 2845 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || ||| |||||||| || ||||||| ||||||| ||||||| Sbjct 2844 CAGAGATGGATTGGTG---CCTTCGGGAACTCGAAC-ACAGGTGCTGCATGGCTGTCGTC 2789 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2788 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCCATTAGTT 2729 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || | | ||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 2728 GCTACGA--AAG---GGCACTCTAATGGGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 2674 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||| || ||||| ||||||| | ||||||||||||| |||||||| | Sbjct 2673 ATGACGTCAAGTCCTCATGGCCCTTATAGGTGGGGCTACACACGTCATACAATGGCTGGT 2614 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||| || || |||||||| ||| |||||||||||| || ||| ||||| Sbjct 2613 ACAAAGGGTTGCCAACCCGCGAGGGGGAGCTAATCCCATAAAGCCAGTCGTAGTCCGGAT 2554 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 | |||||||||||||||| ||||| |||||||||||||||||| |||||| ||| Sbjct 2553 CGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGTC 2494 Query 479 ACGGTGAATACGTTCCCG 496 |||||||||||||||||| Sbjct 2493 ACGGTGAATACGTTCCCG 2476 >seq400 Length=5312 Score = 466 bits (516), Expect = 5e-129 Identities = 400/496 (81%), Gaps = 24/496 (5%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1380 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1321 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||| |||||||||||| | ||||||| | |||| | Sbjct 1320 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCACCTTTTGACATGCCTGGACCGCCA 1261 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 |||| | || || |||||||||| || | ||||||| ||||||| ||||||||| Sbjct 1260 CGGAGAC-GTGGCTTTCCCTTCGGGGACTAG-GACACAGGTGCTGCATGGCTGTCGTCAG 1203 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1202 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCATTAGTTGC 1143 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 ||||||| ||||||| ||||||| ||||||||||| || ||||||||||||||||| Sbjct 1142 CATCATTTAGTTGGGAACTCTAATGGGACTGCCGGTGCTAAGCCGGAGGAAGGTGGGGAT 1083 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 |||||||| || ||||| |||||| |||||||||||||||||||||||| | ||| Sbjct 1082 GACGTCAAGTCCTCATGGCCCTTACAGGGTGGGCTACACACGTGCTACAATGGCGACTAC 1023 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 | ||| | ||||| ||||| | ||||||||||||||| Sbjct 1022 AGAGG---------------------GTTAATCCTTAAAAGTCG-TCTCAGTTCGGATTG 985 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480 | |||||||||||| |||||| |||||||||||||||||| ||||||||||| | Sbjct 984 TCCTCTGCAACTCGAGGGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGC 925 Query 481 GGTGAATACGTTCCCG 496 |||||||||||||||| Sbjct 924 GGTGAATACGTTCCCG 909 >seq819 Length=2095 Score = 394 bits (436), Expect = 3e-107 Identities = 394/502 (78%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 1311 TACGGCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 1370 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| ||||| | ||| Sbjct 1371 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAAGGTCG 1430 Query 121 TAGAGATA-GAGGTTTCCCCTTCGGGGGACAGAGTGAC-AGGTGATGCATGGTTGTCGTC 178 ||||| || | |||||||| || | || ||||| ||||||| ||||||| Sbjct 1431 CAGAGACGCGACCGT---CCTTCGGGACACGAA---ACTAGGTGCTGCATGGCTGTCGTC 1484 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 |||||||| |||||| |||||||||||||||||||||||||||||||| || | |||||| Sbjct 1485 AGCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATGTTTAGTT 1544 Query 239 GCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTG 295 |||| || | ||| |||| ||||||| ||||||| | | ||| | | |||||||||| Sbjct 1545 GCCAGCACGTCAAGGTGGGGACTCTAAACAGACTGCCTGCG-CAAGCAGAGAGGAAGGTG 1603 Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||||||||||| |||||||| |||||| | |||||||||||||||||||||||| Sbjct 1604 GGGACGACGTCAAGTCATCATGGCCCTTACGTCCGGGGCTACACACGTGCTACAATGGAT 1663 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| ||||||| | | || | | | || |||| | |||| |||| ||||||| Sbjct 1664 GGTACAGCGGGCAGCTACATAGCAATATGATGCCAATCTCTAAAAGCCGTTCACAGTTCG 1723 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474 ||| | |||||||||||||| ||||| |||| ||||||||||||| |||||| | Sbjct 1724 GATCGGGGTCTGCAACTCGACCCCGTGAAGTTGGATTCGCTAGTAATCGCGTATCAGCAA 1783 Query 475 TGCTACGGTGAATACGTTCCCG 496 || ||||||||||||||||| Sbjct 1784 TGACGCGGTGAATACGTTCCCG 1805 >seq1201 Length=1307 Score = 134 bits (148), Expect = 4e-29 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422 |||| ||||| | |||| | ||| ||||||| ||| ||||||| ||||||| | Sbjct 1163 AGGGACGCGAACCTGCGACGGGGAGCCAATCCCAGAAACCCTATCTCAGTCCGGATTGGA 1104 Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGG 482 ||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||| Sbjct 1103 GTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAGATCAGCATGCCGCGG 1044 Query 483 TGAATACGTTCCCG 496 |||||||||||||| Sbjct 1043 TGAATACGTTCCCG 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503972777600