Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq365 517 3e-144
seq583 484 2e-134
seq400 466 5e-129
seq819 394 3e-107
seq1201 134 4e-29
>seq365
Length=5917
Score = 517 bits (572), Expect = 3e-144
Identities = 418/500 (84%), Gaps = 8/500 (2%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||||| | |||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2956 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 2897
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCT-GACCCCT 119
| || ||||||||| |||||||||||||||||||||| |||||||| | || | ||
Sbjct 2896 GCGGATTAATTCGATGCAACGCGAAGAACCTTACCAAGGCTTGACATAGCCGAGAACGCT 2837
Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179
|||||||| || || || || || || ||||||| ||||||||||||||||
Sbjct 2836 GTAGAGATACAGAACTCT--TT--GGACACTCGGTTACAGGTGGTGCATGGTTGTCGTCA 2781
Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2780 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCCTTAGTTG 2721
Query 240 CCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297
||| || ||| | |||| |||| | ||||||| | ||| ||||||||||||||
Sbjct 2720 CCAGCACGTTATGGTGGGAACTCATGGGATACTGCCGTGGTCAACACGGAGGAAGGTGGG 2661
Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357
|| |||||||||||||||||||||||||| ||||||| ||| | ||||||||||| | |
Sbjct 2660 GATGACGTCAAATCATCATGCCCCTTATGTCTTGGGCTTCACGCATGCTACAATGGCCGA 2601
Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGA 417
|||||||||| |||| |||||||||| ||| ||||||| ||||| | ||||||||||||
Sbjct 2600 TACAAAGGGCTGCGATACCGCGAGGTGGAGCGAATCCCAAAAAGTCGGTCTCAGTTCGGA 2541
Query 418 TTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATG 476
||| |||||||||||||| |||||| ||| ||||||||||||| |||||||| | |
Sbjct 2540 TTGGGGTCTGCAACTCGACCCCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACG 2481
Query 477 CTACGGTGAATACGTTCCCG 496
|| |||||||||||||||||
Sbjct 2480 CTGCGGTGAATACGTTCCCG 2461
>seq583
Length=3271
Score = 484 bits (536), Expect = 2e-134
Identities = 409/498 (82%), Gaps = 11/498 (2%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2964 TACGGCCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGTAT 2905
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| |||||||||||||||||||| |||||||| || | ||
Sbjct 2904 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGCCTTGACATGTCGAGAACTTTC 2845
Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178
|||||| || ||| |||||||| || ||||||| ||||||| |||||||
Sbjct 2844 CAGAGATGGATTGGTG---CCTTCGGGAACTCGAAC-ACAGGTGCTGCATGGCTGTCGTC 2789
Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2788 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGCCATTAGTT 2729
Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298
|| | | ||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2728 GCTACGA--AAG---GGCACTCTAATGGGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 2674
Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358
| |||||||| || ||||| ||||||| | ||||||||||||| |||||||| |
Sbjct 2673 ATGACGTCAAGTCCTCATGGCCCTTATAGGTGGGGCTACACACGTCATACAATGGCTGGT 2614
Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418
|||||||| || || |||||||| ||| |||||||||||| || ||| |||||
Sbjct 2613 ACAAAGGGTTGCCAACCCGCGAGGGGGAGCTAATCCCATAAAGCCAGTCGTAGTCCGGAT 2554
Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478
| |||||||||||||||| ||||| |||||||||||||||||| |||||| |||
Sbjct 2553 CGCAGTCTGCAACTCGACTGCGTGAAGTCGGAATCGCTAGTAATCGTGGATCAGAATGTC 2494
Query 479 ACGGTGAATACGTTCCCG 496
||||||||||||||||||
Sbjct 2493 ACGGTGAATACGTTCCCG 2476
>seq400
Length=5312
Score = 466 bits (516), Expect = 5e-129
Identities = 400/496 (81%), Gaps = 24/496 (5%)
Strand=Plus/Minus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1380 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 1321
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
||||||||||||||||||||||| |||||||||||| | ||||||| | |||| |
Sbjct 1320 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCACCTTTTGACATGCCTGGACCGCCA 1261
Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180
|||| | || || |||||||||| || | ||||||| ||||||| |||||||||
Sbjct 1260 CGGAGAC-GTGGCTTTCCCTTCGGGGACTAG-GACACAGGTGCTGCATGGCTGTCGTCAG 1203
Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1202 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGCCATTAGTTGC 1143
Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300
||||||| ||||||| ||||||| ||||||||||| || |||||||||||||||||
Sbjct 1142 CATCATTTAGTTGGGAACTCTAATGGGACTGCCGGTGCTAAGCCGGAGGAAGGTGGGGAT 1083
Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360
|||||||| || ||||| |||||| |||||||||||||||||||||||| | |||
Sbjct 1082 GACGTCAAGTCCTCATGGCCCTTACAGGGTGGGCTACACACGTGCTACAATGGCGACTAC 1023
Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420
| ||| | ||||| ||||| | |||||||||||||||
Sbjct 1022 AGAGG---------------------GTTAATCCTTAAAAGTCG-TCTCAGTTCGGATTG 985
Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTAC 480
| |||||||||||| |||||| |||||||||||||||||| ||||||||||| |
Sbjct 984 TCCTCTGCAACTCGAGGGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGC 925
Query 481 GGTGAATACGTTCCCG 496
||||||||||||||||
Sbjct 924 GGTGAATACGTTCCCG 909
>seq819
Length=2095
Score = 394 bits (436), Expect = 3e-107
Identities = 394/502 (78%), Gaps = 13/502 (3%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1311 TACGGCCGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 1370
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| | |||||| |||||||||| ||||| | |||
Sbjct 1371 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAAAGTTAGTGAAGGTCG 1430
Query 121 TAGAGATA-GAGGTTTCCCCTTCGGGGGACAGAGTGAC-AGGTGATGCATGGTTGTCGTC 178
||||| || | |||||||| || | || ||||| ||||||| |||||||
Sbjct 1431 CAGAGACGCGACCGT---CCTTCGGGACACGAA---ACTAGGTGCTGCATGGCTGTCGTC 1484
Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238
|||||||| |||||| |||||||||||||||||||||||||||||||| || | ||||||
Sbjct 1485 AGCTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCCTATGTTTAGTT 1544
Query 239 GCCATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTG 295
|||| || | ||| |||| ||||||| ||||||| | | ||| | | ||||||||||
Sbjct 1545 GCCAGCACGTCAAGGTGGGGACTCTAAACAGACTGCCTGCG-CAAGCAGAGAGGAAGGTG 1603
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||
Sbjct 1604 GGGACGACGTCAAGTCATCATGGCCCTTACGTCCGGGGCTACACACGTGCTACAATGGAT 1663
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415
|||| ||||||| | | || | | | || |||| | |||| |||| |||||||
Sbjct 1664 GGTACAGCGGGCAGCTACATAGCAATATGATGCCAATCTCTAAAAGCCGTTCACAGTTCG 1723
Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-A 474
||| | |||||||||||||| ||||| |||| ||||||||||||| |||||| |
Sbjct 1724 GATCGGGGTCTGCAACTCGACCCCGTGAAGTTGGATTCGCTAGTAATCGCGTATCAGCAA 1783
Query 475 TGCTACGGTGAATACGTTCCCG 496
|| |||||||||||||||||
Sbjct 1784 TGACGCGGTGAATACGTTCCCG 1805
>seq1201
Length=1307
Score = 134 bits (148), Expect = 4e-29
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 363 AGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTA 422
|||| ||||| | |||| | ||| ||||||| ||| ||||||| ||||||| |
Sbjct 1163 AGGGACGCGAACCTGCGACGGGGAGCCAATCCCAGAAACCCTATCTCAGTCCGGATTGGA 1104
Query 423 GTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGG 482
||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |||
Sbjct 1103 GTCTGCAACTCGACTCCATGAAGTCGGAATCGCTAGTAATCGCAGATCAGCATGCCGCGG 1044
Query 483 TGAATACGTTCCCG 496
||||||||||||||
Sbjct 1043 TGAATACGTTCCCG 1030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503972777600
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