Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq194 136 6e-30
seq723 78.8 1e-12
seq528 78.8 1e-12
seq394 78.8 1e-12
>seq194
Length=13415
Score = 136 bits (150), Expect = 6e-30
Identities = 101/116 (87%), Gaps = 3/116 (3%)
Strand=Plus/Plus
Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAA 202
|| ||||| | || |||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct 11643 ATATAGCA--TAAAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAA 11700
Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 11701 CTAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 11756
Score = 78.8 bits (86), Expect = 1e-12
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|| |||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 11519 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAT 11571
>seq723
Length=2523
Score = 78.8 bits (86), Expect = 1e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 2430 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 2487
>seq528
Length=3656
Score = 78.8 bits (86), Expect = 1e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 96 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 39
>seq394
Length=5398
Score = 78.8 bits (86), Expect = 1e-12
Identities = 52/58 (90%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|| |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 1885 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 1828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796786028610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |