Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq194 136 6e-30 seq723 78.8 1e-12 seq528 78.8 1e-12 seq394 78.8 1e-12 >seq194 Length=13415 Score = 136 bits (150), Expect = 6e-30 Identities = 101/116 (87%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAA 202 || ||||| | || |||||| ||||||||||||| |||||||||||||| ||||| || Sbjct 11643 ATATAGCA--TAAAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAA 11700 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 11701 CTAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 11756 Score = 78.8 bits (86), Expect = 1e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 || |||||||||||||| |||| | |||||||||||||||||||||||||||| Sbjct 11519 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAT 11571 >seq723 Length=2523 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 2430 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 2487 >seq528 Length=3656 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 96 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 39 >seq394 Length=5398 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 1885 AAATAAGAACGGCCATGCACCACCAACCACCAAATCATGAAAGAGCTATCAATCTGTC 1828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786028610