Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq194 345 7e-93
seq196 324 2e-86
seq1285 284 2e-74
seq555 78.8 2e-12
>seq194
Length=13415
Score = 345 bits (382), Expect = 7e-93
Identities = 235/264 (89%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 523 GTCAACAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 582
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 583 ATTAGTGGGTGAACAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCG 642
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct 643 ACATCGAAGGATCAAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATC 702
Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269
|||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 703 CCTGTGGTAACTTTTCTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAG 762
Query 270 GCCACACTTTCATGGTTTGTATTC 293
||||| |||||| ||| |||||||
Sbjct 763 GCCACCCTTTCAGGGTCTGTATTC 786
>seq196
Length=13323
Score = 324 bits (358), Expect = 2e-86
Identities = 221/249 (89%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 11985 AAAATAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 12044
Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164
||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 12045 ATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAA 12104
Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
|||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 12105 AAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 12164
Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284
||||||||||| ||| | || |||||||||||||||||| |||||| ||
Sbjct 12165 CTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAGGCCACCCTTTCAGGG 12224
Query 285 TTTGTATTC 293
| |||||||
Sbjct 12225 TCTGTATTC 12233
>seq1285
Length=1184
Score = 284 bits (314), Expect = 2e-74
Identities = 174/185 (94%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TAAACATAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 1059
Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162
||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1060 CAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATC 1119
Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222
|||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1120 AAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 1179
Query 223 TTCTG 227
|||||
Sbjct 1180 TTCTG 1184
>seq555
Length=3447
Score = 78.8 bits (86), Expect = 2e-12
Identities = 123/175 (70%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| |||||
Sbjct 1077 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 1136
Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169
||| ||| |||| | | | ||| || ||||||||||||| | | || |
Sbjct 1137 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCGAACCTC 1193
Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224
||||| ||||| | ||||| | || |||| |||||||| | ||| |||||
Sbjct 1194 CCCGTCGATATGAGCTCTTGGGGGAGACTAGCCTGTTATCCCCGGAGTACCTTTT 1248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854384535360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |