Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq194 345 7e-93 seq196 324 2e-86 seq1285 284 2e-74 seq555 78.8 2e-12 >seq194 Length=13415 Score = 345 bits (382), Expect = 7e-93 Identities = 235/264 (89%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 523 GTCAACAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 582 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct 583 ATTAGTGGGTGAACAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCG 642 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| Sbjct 643 ACATCGAAGGATCAAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATC 702 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 703 CCTGTGGTAACTTTTCTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAG 762 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||||| |||||| ||| ||||||| Sbjct 763 GCCACCCTTTCAGGGTCTGTATTC 786 >seq196 Length=13323 Score = 324 bits (358), Expect = 2e-86 Identities = 221/249 (89%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 45 AAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 104 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 11985 AAAATAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA 12044 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 ||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 12045 ATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAA 12104 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 12105 AAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 12164 Query 225 CTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGG 284 ||||||||||| ||| | || |||||||||||||||||| |||||| || Sbjct 12165 CTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAGGCCACCCTTTCAGGG 12224 Query 285 TTTGTATTC 293 | ||||||| Sbjct 12225 TCTGTATTC 12233 >seq1285 Length=1184 Score = 284 bits (314), Expect = 2e-74 Identities = 174/185 (94%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1000 TAAACATAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 1059 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 1060 CAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATC 1119 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 |||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1120 AAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 1179 Query 223 TTCTG 227 ||||| Sbjct 1180 TTCTG 1184 >seq555 Length=3447 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 1077 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 1136 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | | || | Sbjct 1137 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCGAACCTC 1193 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| | ||||| | || |||| |||||||| | ||| ||||| Sbjct 1194 CCCGTCGATATGAGCTCTTGGGGGAGACTAGCCTGTTATCCCCGGAGTACCTTTT 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854384535360