Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq555 197 3e-48 seq412 185 2e-44 seq370 185 2e-44 seq1374 163 6e-38 >seq555 Length=3447 Score = 197 bits (218), Expect = 3e-48 Identities = 172/214 (80%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| ||||||||||||| |||||||||| |||||||||||||||| | |||| | |||| Sbjct 1443 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCTAAAGGTTCCCT 1384 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| | ||| |||| |||| | ||||||| |||| ||||||| ||||||| || ||| Sbjct 1383 CAGCACGCTTGGTAACCGTGCGTAGAGTGCAATGGCATAAGGGTGCTTGACTGTGAGACC 1324 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||| ||||||| || | || |||||||| ||| | | |||||| ||| Sbjct 1323 AACAAGTCGATCAGGTACGAAAGCAGGACATAGTGATCCGGTGGTTCCGTATGGAAGGGC 1264 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||| | ||||||||| ||| | ||||||| Sbjct 1263 CATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 1230 >seq412 Length=5103 Score = 185 bits (204), Expect = 2e-44 Identities = 180/230 (78%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||| | Sbjct 960 GGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGAG 901 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG--CAAAGGCAAAAGGGT 229 | | ||| ||| |||||| || ||| | | |||||| ||| |||||||| ||| || Sbjct 900 CTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCGT 843 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | | | || |||||| | |||| | || |||| |||||||| || Sbjct 842 GCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTGG 783 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 782 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 733 >seq370 Length=5836 Score = 185 bits (204), Expect = 2e-44 Identities = 198/260 (76%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 80 ATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139 || |||||||| || ||||||| || |||||||| || | ||| |||||||||| Sbjct 1 ATGTCTAACCG--CG--GTATAACAGTGTCCGGGACAGCGTATGGTGGGTAGTTTGACTG 56 Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199 |||||||||||||| |||||||||||||||||| | | | | ||||| || |||| Sbjct 57 GGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGAACGGTCGGAA 116 Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259 | | | || ||||||| |||| ||| | ||||||| | || |||||| ||||| Sbjct 117 ATCGTTCGTCGAGTGCAATGGCATAAGCCCGCCTGACTGCAAGACTGACAAGTCGAGCAG 176 Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319 |||||||||||| | || |||||||| ||| | | ||||| |||| |||||| ||||| Sbjct 177 AGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAACGGA 236 Query 320 TAAAAGCTACCCTGGGGATA 339 |||||| ||| || |||||| Sbjct 237 TAAAAGGTACTCTAGGGATA 256 >seq1374 Length=1034 Score = 163 bits (180), Expect = 6e-38 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 ||||| ||| | ||| ||||||||||||| |||||||||| ||| ||||||||||| Sbjct 252 GGACATTGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 311 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||| || ||||| | ||| |||| | || ||||||| |||| ||| | Sbjct 312 TTCAAAGGTAAGCTCAGTACGCTTGGTAACCGTACGTGGAGTGCAATGGCATAAGCCCGC 371 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 ||||||| | || |||||| ||||| |||||||||||| | || |||||||| ||| Sbjct 372 CTGACTGCAAGACAGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTC 431 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | ||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 432 CCGTGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982382218560