Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq555 197 3e-48
seq412 185 2e-44
seq370 185 2e-44
seq1374 163 6e-38
>seq555
Length=3447
Score = 197 bits (218), Expect = 3e-48
Identities = 172/214 (80%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185
||| ||||||||||||| |||||||||| |||||||||||||||| | |||| | ||||
Sbjct 1443 GGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGAGTAACGGAGGCTTCTAAAGGTTCCCT 1384
Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245
|||| | ||| |||| |||| | ||||||| |||| ||||||| ||||||| || |||
Sbjct 1383 CAGCACGCTTGGTAACCGTGCGTAGAGTGCAATGGCATAAGGGTGCTTGACTGTGAGACC 1324
Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305
|||||| | |||| ||||||| || | || |||||||| ||| | | |||||| |||
Sbjct 1323 AACAAGTCGATCAGGTACGAAAGCAGGACATAGTGATCCGGTGGTTCCGTATGGAAGGGC 1264
Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||||| | ||||||||| ||| | |||||||
Sbjct 1263 CATCGCTCAAAGGATAAAAGGTACTCCGGGGATA 1230
>seq412
Length=5103
Score = 185 bits (204), Expect = 2e-44
Identities = 180/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
|||| |||| | ||| |||||||||||||||||||||||| ||||||||||||||| |
Sbjct 960 GGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGAG 901
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTG--CAAAGGCAAAAGGGT 229
| | ||| ||| |||||| || ||| | | |||||| ||| |||||||| ||| ||
Sbjct 900 CTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCGT 843
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | | | | || |||||| | |||| | || |||| |||||||| ||
Sbjct 842 GCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTGG 783
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| ||| |||||| |||| |||||| ||||||||||| ||| | |||||||
Sbjct 782 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 733
>seq370
Length=5836
Score = 185 bits (204), Expect = 2e-44
Identities = 198/260 (76%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 80 ATTTCTAACCGGACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTG 139
|| |||||||| || ||||||| || |||||||| || | ||| ||||||||||
Sbjct 1 ATGTCTAACCG--CG--GTATAACAGTGTCCGGGACAGCGTATGGTGGGTAGTTTGACTG 56
Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAA 199
|||||||||||||| |||||||||||||||||| | | | | ||||| || ||||
Sbjct 57 GGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGAACGGTCGGAA 116
Query 200 ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAG 259
| | | || ||||||| |||| ||| | ||||||| | || |||||| |||||
Sbjct 117 ATCGTTCGTCGAGTGCAATGGCATAAGCCCGCCTGACTGCAAGACTGACAAGTCGAGCAG 176
Query 260 GGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGA 319
|||||||||||| | || |||||||| ||| | | ||||| |||| |||||| |||||
Sbjct 177 AGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCGTGGAAGGGCCATCGCTCAACGGA 236
Query 320 TAAAAGCTACCCTGGGGATA 339
|||||| ||| || ||||||
Sbjct 237 TAAAAGGTACTCTAGGGATA 256
>seq1374
Length=1034
Score = 163 bits (180), Expect = 6e-38
Identities = 173/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171
||||| ||| | ||| ||||||||||||| |||||||||| ||| |||||||||||
Sbjct 252 GGACATTGTTTGGTGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAAGGTAACGGAGGCT 311
Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231
||||| || ||||| | ||| |||| | || ||||||| |||| ||| |
Sbjct 312 TTCAAAGGTAAGCTCAGTACGCTTGGTAACCGTACGTGGAGTGCAATGGCATAAGCCCGC 371
Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291
||||||| | || |||||| ||||| |||||||||||| | || |||||||| |||
Sbjct 372 CTGACTGCAAGACAGACAAGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTC 431
Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | ||||| |||| |||||| ||||||||||| ||| | |||||||
Sbjct 432 CCGTGTGGAAGGGCCATCGCTCAACGGATAAAAGGTACGCCGGGGATA 479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982382218560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |