Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq555 205 1e-50
seq412 136 4e-30
seq1688 120 3e-25
seq1374 104 3e-20
>seq555
Length=3447
Score = 205 bits (226), Expect = 1e-50
Identities = 147/178 (83%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1604 GGGTCTTTTCGTCCCACTGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAG 1663
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
|||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1664 CTCATGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCGA 1723
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1724 CAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 1781
>seq412
Length=5103
Score = 136 bits (150), Expect = 4e-30
Identities = 135/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | |||| | | |||||||||| | | | |||||||||||
Sbjct 1116 CGGGGTCTTTCCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTG 1175
Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141
|| || ||| || |||||| ||| |||||||||||||||||||||||||
Sbjct 1176 AG-TCTCGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 1234
Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTT 201
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1235 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTT 1294
Query 202 C 202
|
Sbjct 1295 C 1295
>seq1688
Length=639
Score = 120 bits (132), Expect = 3e-25
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||| |||||| | ||||| |||| | | | ||| ||| ||||
Sbjct 213 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 272
Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| |||| || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 273 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 331
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202
||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 332 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 391
>seq1374
Length=1034
Score = 104 bits (114), Expect = 3e-20
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| |||||| | |||||||| |||| ||||||||||||| |||||||||| ||
Sbjct 104 GGGGTCTTTCCGTCCCGTTGCGGGTAACCGGCGTCTTCACCGATACCACAATTTCACCGA 45
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCA 127
||||| || |||||||| |||||||||||||||
Sbjct 44 GCTCATGGCTGAGACAGCGCCCAGATCGTTACACCATTCGTGCA 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547190405190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |