Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq400 275 1e-71
seq412 253 4e-65
seq1666 235 1e-59
seq365 223 7e-56
seq129 223 7e-56
seq1775 192 1e-46
seq1215 178 3e-42
seq902 176 1e-41
seq1178 172 1e-40
seq819 161 2e-37
>seq400
Length=5312
Score = 275 bits (304), Expect = 1e-71
Identities = 262/334 (78%), Gaps = 16/334 (5%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|||||||||| ||||||||| | || |||||||||| ||||| |||||||||||||||
Sbjct 1813 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 1870
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1871 TTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1930
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 1931 GTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTACCTCAC 1990
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
||||||||||||| ||| ||| ||| || ||| | || ||||
Sbjct 1991 CAACTAGCTAATCAGACGCGGGCCGCTCTAATGGCGATA------AA--------TCTTT 2036
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| |||| ||| | || |||||||||| |||||| ||||| || || | |||
Sbjct 2037 CCCCCGAAGGGCACATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCAAAAGG 2096
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
|| |||| | | ||||||||||||||||| ||
Sbjct 2097 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 2130
>seq412
Length=5103
Score = 253 bits (280), Expect = 4e-65
Identities = 185/215 (86%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | |
Sbjct 4448 GTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGC 4507
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241
||||||||||||||||| | ||||||| || |||||||| |||||| |||||||||||
Sbjct 4508 CAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTT 4567
Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301
| |||||||| |||||||||||||||||| |||||| |||||||||||||| || ||
Sbjct 4568 CACCCGTAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGACTGGG 4627
Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| |||| | |||||||||||||| |||| |||
Sbjct 4628 CACGTTCCGATACATTACTCACCCGTTCGCCACTC 4662
>seq1666
Length=670
Score = 235 bits (260), Expect = 1e-59
Identities = 202/250 (81%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146
|||||||||||||||| |||||||||||| |||||||| ||| || ||||||||||||||
Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611
Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTC 206
||| |||||||| |||||| ||| ||| | ||||||||| |||||| | | | ||
Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATCAGCCG 551
Query 207 ATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTA 266
||| |||||||||||||||||||||||||||||| || ||| | |||||||||||
Sbjct 550 CTCTAGTAGCGCAAGGCCCGAAGGTCCCCTGCTTTCATCCTTAGATCTCATGCGGTATTA 491
Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326
|| | |||| ||||||||||||||| ||||| |||| | | ||||||||||||
Sbjct 490 GCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACCCG 431
Query 327 TCCGCCGCTC 336
| |||| |||
Sbjct 430 TTCGCCACTC 421
>seq365
Length=5917
Score = 223 bits (246), Expect = 7e-56
Identities = 166/192 (86%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| ||||||
Sbjct 3397 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 3454
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 3455 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 3514
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| | | ||| |||||||| || | ||| ||||||||||||||||||||||||||||
Sbjct 3515 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 3574
Query 182 CAACTAGCTAAT 193
|||| |||| ||
Sbjct 3575 CAACAAGCTGAT 3586
>seq129
Length=23434
Score = 223 bits (246), Expect = 7e-56
Identities = 222/289 (77%), Gaps = 14/289 (5%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||
Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||||||| ||| |||| ||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313
Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCG 226
|||||||||||||||||||||||||||| ||| ||| ||| |||||
Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCT-------AAAGGCGAT 23260
Query 227 AAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTA 286
|| ||||| |||| ||| | || ||| |||| | |||||||| | ||
Sbjct 23259 AA-------ATCTTTCCCCCGAAGGGCACATTCGGCATTACCACCCGTTTCCAGGAGCTA 23207
Query 287 TCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
| || || ||||| |||| | | ||||||||||||||||| ||
Sbjct 23206 TTCCGAACCTAAAGGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT 23158
>seq1775
Length=549
Score = 192 bits (212), Expect = 1e-46
Identities = 155/186 (83%), Gaps = 1/186 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||| |||||| |||||||| ||||||||| |||||||||| ||||||||||||
Sbjct 411 CACGCGGCAT-GGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTC 353
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||| |||||||| | |
Sbjct 352 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCT 293
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| ||| ||| |||||| |||| |||||| |||||||| ||||| ||| | ||||||
Sbjct 292 ACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCAT 233
Query 209 CTGATA 214
|| |||
Sbjct 232 CTTATA 227
>seq1215
Length=1293
Score = 178 bits (196), Expect = 3e-42
Identities = 189/251 (75%), Gaps = 14/251 (6%)
Strand=Plus/Plus
Query 85 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC 144
|||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60
Query 145 AGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGC 204
|| || ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120
Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264
|||| || || | || ||||| || ||| ||||| ||||||
Sbjct 121 CCATCCTATTCCGATA------AA--------TCTTTCCCCAAAAGGGCGTATCCGGTAT 166
Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324
|||| ||||||| ||||| || | || || || |||| | | |||||||||
Sbjct 167 TAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTTCCCACGTGTTACTCACC 226
Query 325 CGTCCGCCGCT 335
|||| ||| ||
Sbjct 227 CGTCTGCCACT 237
>seq902
Length=1850
Score = 176 bits (194), Expect = 1e-41
Identities = 157/193 (81%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
||||||| || || | || |||| | |||||||||| |||||| |||| || | ||
Sbjct 121 TTTACAACCCAGAGGGCCGTCTTCCTG-CACGCGGCAT-GGCTGGTTCAGAGTTCCCTCC 178
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||| |||||||||| ||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 179 ATTGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 238
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| |||||||||| | || ||||||||||||||||||| ||||| |
Sbjct 239 TGTGGGGGATTCTCCTCTCAGAGCCCCTAGACATCGTCGCCTTGGTGAGCCGTTACCCCG 298
Query 181 CCAACTAGCTAAT 193
|||||||||||||
Sbjct 299 CCAACTAGCTAAT 311
>seq1178
Length=1334
Score = 172 bits (190), Expect = 1e-40
Identities = 174/228 (76%), Gaps = 14/228 (6%)
Strand=Plus/Plus
Query 109 TCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGA 168
||||||| |||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60
Query 169 GCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAA 228
||||||||| |||||||||||||||| || ||||||||| | | || | ||
Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATA------AA 114
Query 229 GGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATC 288
||||| |||||||| ||||| |||||||||| ||||||| | |||||
Sbjct 115 --------TCTTTCCCCCGTAGGGCGTATACGGTATTAGCAGTCGTTTCCAACTGTTATT 166
Query 289 CCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336
|| | | ||| ||||||| | || ||||||||||||| |||||||
Sbjct 167 CCGTAGCAAAAGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 214
>seq819
Length=2095
Score = 161 bits (178), Expect = 2e-37
Identities = 136/166 (82%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||| |||||| ||||| || | ||||||| |||||||||| |||||||||||
Sbjct 429 CACGCGGCAT-GGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTC 371
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| ||||| |||||||| || |
Sbjct 370 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCT 311
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
| |||| | |||||| ||| ||||| |||||||| ||||||
Sbjct 310 AAAGATCACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATC 265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071980596800
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