Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq400 275 1e-71 seq412 253 4e-65 seq1666 235 1e-59 seq365 223 7e-56 seq129 223 7e-56 seq1775 192 1e-46 seq1215 178 3e-42 seq902 176 1e-41 seq1178 172 1e-40 seq819 161 2e-37 >seq400 Length=5312 Score = 275 bits (304), Expect = 1e-71 Identities = 262/334 (78%), Gaps = 16/334 (5%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| ||||||||| | || |||||||||| ||||| ||||||||||||||| Sbjct 1813 TTTACAATCCTAAGACCTTCAT-CATTCACGCGGCAT-GGCTGCGTCAGGCTTTCGCCCA 1870 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1871 TTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1930 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||| Sbjct 1931 GTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCTTTTACCTCAC 1990 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| ||| ||| || ||| | || |||| Sbjct 1991 CAACTAGCTAATCAGACGCGGGCCGCTCTAATGGCGATA------AA--------TCTTT 2036 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||| ||| | || |||||||||| |||||| ||||| || || | ||| Sbjct 2037 CCCCCGAAGGGCACATTCGGTATTAGCACAAGTTTCCCTGAGTTATTCCGAACCAAAAGG 2096 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || |||| | | ||||||||||||||||| || Sbjct 2097 CACGTTCCCACGTGTTACTCACCCGTCCGCCACT 2130 >seq412 Length=5103 Score = 253 bits (280), Expect = 4e-65 Identities = 185/215 (86%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | | Sbjct 4448 GTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGC 4507 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||||||| | ||||||| || |||||||| |||||| ||||||||||| Sbjct 4508 CAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTT 4567 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||||||| |||||||||||||||||| |||||| |||||||||||||| || || Sbjct 4568 CACCCGTAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGACTGGG 4627 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | |||||||||||||| |||| ||| Sbjct 4628 CACGTTCCGATACATTACTCACCCGTTCGCCACTC 4662 >seq1666 Length=670 Score = 235 bits (260), Expect = 1e-59 Identities = 202/250 (81%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||||||||||||||| |||||||||||| |||||||| ||| || |||||||||||||| Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTC 206 ||| |||||||| |||||| ||| ||| | ||||||||| |||||| | | | || Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATCAGCCG 551 Query 207 ATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTA 266 ||| |||||||||||||||||||||||||||||| || ||| | ||||||||||| Sbjct 550 CTCTAGTAGCGCAAGGCCCGAAGGTCCCCTGCTTTCATCCTTAGATCTCATGCGGTATTA 491 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326 || | |||| ||||||||||||||| ||||| |||| | | |||||||||||| Sbjct 490 GCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACCCG 431 Query 327 TCCGCCGCTC 336 | |||| ||| Sbjct 430 TTCGCCACTC 421 >seq365 Length=5917 Score = 223 bits (246), Expect = 7e-56 Identities = 166/192 (86%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 3397 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 3454 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 3455 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 3514 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||||||||||||||||||||||||||| Sbjct 3515 GTGGCCGGTCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCAC 3574 Query 182 CAACTAGCTAAT 193 |||| |||| || Sbjct 3575 CAACAAGCTGAT 3586 >seq129 Length=23434 Score = 223 bits (246), Expect = 7e-56 Identities = 222/289 (77%), Gaps = 14/289 (5%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||| Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| ||| |||| ||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCG 226 |||||||||||||||||||||||||||| ||| ||| ||| ||||| Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCT-------AAAGGCGAT 23260 Query 227 AAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTA 286 || ||||| |||| ||| | || ||| |||| | |||||||| | || Sbjct 23259 AA-------ATCTTTCCCCCGAAGGGCACATTCGGCATTACCACCCGTTTCCAGGAGCTA 23207 Query 287 TCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | || || ||||| |||| | | ||||||||||||||||| || Sbjct 23206 TTCCGAACCTAAAGGCACGTTCCCACGTGTTACTCACCCGTCCGCCACT 23158 >seq1775 Length=549 Score = 192 bits (212), Expect = 1e-46 Identities = 155/186 (83%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||||||| ||||||||| |||||||||| |||||||||||| Sbjct 411 CACGCGGCAT-GGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTC 353 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||| |||||||| | | Sbjct 352 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCT 293 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || ||| ||| |||||| |||| |||||| |||||||| ||||| ||| | |||||| Sbjct 292 ACCCATCATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCAT 233 Query 209 CTGATA 214 || ||| Sbjct 232 CTTATA 227 >seq1215 Length=1293 Score = 178 bits (196), Expect = 3e-42 Identities = 189/251 (75%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 85 CCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACC 144 |||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60 Query 145 AGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGC 204 || || ||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120 Query 205 TCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTAT 264 |||| || || | || ||||| || ||| ||||| |||||| Sbjct 121 CCATCCTATTCCGATA------AA--------TCTTTCCCCAAAAGGGCGTATCCGGTAT 166 Query 265 TAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACC 324 |||| ||||||| ||||| || | || || || |||| | | ||||||||| Sbjct 167 TAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTTCCCACGTGTTACTCACC 226 Query 325 CGTCCGCCGCT 335 |||| ||| || Sbjct 227 CGTCTGCCACT 237 >seq902 Length=1850 Score = 176 bits (194), Expect = 1e-41 Identities = 157/193 (81%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 2 TTTACAATCC-GAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| || || | || |||| | |||||||||| |||||| |||| || | || Sbjct 121 TTTACAACCCAGAGGGCCGTCTTCCTG-CACGCGGCAT-GGCTGGTTCAGAGTTCCCTCC 178 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||| Sbjct 179 ATTGACCAATATTCCTTACTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAG 238 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| |||||||||| | || ||||||||||||||||||| ||||| | Sbjct 239 TGTGGGGGATTCTCCTCTCAGAGCCCCTAGACATCGTCGCCTTGGTGAGCCGTTACCCCG 298 Query 181 CCAACTAGCTAAT 193 ||||||||||||| Sbjct 299 CCAACTAGCTAAT 311 >seq1178 Length=1334 Score = 172 bits (190), Expect = 1e-40 Identities = 174/228 (76%), Gaps = 14/228 (6%) Strand=Plus/Plus Query 109 TCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGA 168 ||||||| |||||||| ||||||||||||||||||||| || ||||||||||||||| Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60 Query 169 GCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAA 228 ||||||||| |||||||||||||||| || ||||||||| | | || | || Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATA------AA 114 Query 229 GGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATC 288 ||||| |||||||| ||||| |||||||||| ||||||| | ||||| Sbjct 115 --------TCTTTCCCCCGTAGGGCGTATACGGTATTAGCAGTCGTTTCCAACTGTTATT 166 Query 289 CCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || | | ||| ||||||| | || ||||||||||||| ||||||| Sbjct 167 CCGTAGCAAAAGGTAGATTCCCACGCGTTACTCACCCGTCTGCCGCTC 214 >seq819 Length=2095 Score = 161 bits (178), Expect = 2e-37 Identities = 136/166 (82%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| ||||| || | ||||||| |||||||||| ||||||||||| Sbjct 429 CACGCGGCAT-GGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTC 371 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||| |||||||| || | Sbjct 370 CCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCT 311 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 | |||| | |||||| ||| ||||| |||||||| |||||| Sbjct 310 AAAGATCACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071980596800