Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq134 100 4e-19 seq104 95.1 2e-17 seq96 87.8 3e-15 >seq134 Length=22675 Score = 100 bits (110), Expect = 4e-19 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 54 CAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATC 113 |||| | || | || || |||||||| ||||||||||| || |||||||||||||| || Sbjct 19859 CAGGGCGGGCGAGGGGGCCTCTTCCAGCACCTTCTGGTGGCGGCGTTGCAGCGAGCAGTC 19800 Query 114 GCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGG 151 ||| ||||||||||||| | ||| ||| |||| ||||| Sbjct 19799 GCGTTCGCCCAGGTGGACGACGTTGCCGTGGCTGTCGG 19762 >seq104 Length=31416 Score = 95.1 bits (104), Expect = 2e-17 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 52 TCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAA 111 |||| |||||| ||||| |||||||| | ||||||||||| || || ||||||||||| Sbjct 29483 TCCATGCCCGGCGCCGGTGCTTCTTCGATCACCTTCTGGTGGCGGCGCTGCAGCGAGCAG 29424 Query 112 TCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACG 171 ||||| || |||||||| | | | ||| |||| |||| | || ||||| || | | Sbjct 29423 TCGCGCTCATGCAGGTGGACGACATTGCCGTGGCTGTCGCCGAAGACCTGCACCTCGATG 29364 Query 172 TGACGTGGGTTGGTCAGGTA 191 || || ||| ||| | ||| Sbjct 29363 TGGCGCGGGCGGGTGATGTA 29344 >seq96 Length=39921 Score = 87.8 bits (96), Expect = 3e-15 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 52 TCCAGGCCCGGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAA 111 |||| ||| || ||||| ||||| || | ||||||||||| || || ||||||||||| Sbjct 21590 TCCATGCCGGGCGCCGGGGCTTCCTCGATCACCTTCTGGTGGCGGCGCTGCAGCGAGCAG 21531 Query 112 TCGCGGTCGCCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACG 171 ||||| || |||||||| | ||| ||| |||| |||| | || ||||| || | | Sbjct 21530 TCGCGTTCATGCAGGTGGACGACGTTGCCGTGGCTGTCGCCGAAGACCTGCACCTCGATG 21471 Query 172 TGACGTGG 179 || || || Sbjct 21470 TGGCGCGG 21463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735987094700