Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq365 753 0.0 seq583 363 6e-98 seq555 322 2e-85 seq412 269 1e-69 seq1299 138 4e-30 >seq365 Length=5917 Score = 753 bits (834), Expect = 0.0 Identities = 528/599 (88%), Gaps = 12/599 (2%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 774 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 832 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||| | ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 833 GAGTTTAGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 892 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 893 GGCAAGAAACACGCAACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTATCACGAAG 952 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 953 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 1012 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1013 TCGGTCCTCCACGACGTCTTACCGTCGCTTCAACCTGGCCATGGATAGATCACTTCGCTT 1072 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | ||| ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1073 CGGGTCTAGGACATGCGACTGAATCGCCCTATTCAGACTCGCTTTCGCTACGGCTACCCC 1132 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 1133 ACACGGGTTAACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCT 1192 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| ||||| |||| ||||| |||||||||| ||| | |||||||||| Sbjct 1193 GTCAC-----ACCTACAAGG-----GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGT 1242 Query 480 ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 1243 ACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTAT 1302 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 |||||| | |||||||||||||||| | |||||||| | |||||||||||| ||||| Sbjct 1303 CGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTC 1361 >seq583 Length=3271 Score = 363 bits (402), Expect = 6e-98 Identities = 414/545 (76%), Gaps = 22/545 (4%) Strand=Plus/Plus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 584 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 641 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| | | || || || || |||||||| |||||| |||||| Sbjct 642 AGTGCTCTACCCCCGC-AGGTAATACTTGAGGCACTACCTAAATAGTTTTCGGAGAGAAC 700 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||||| || ||||||||||||||||||||| ||||||||| | |||| Sbjct 701 CAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAATTTTT 760 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | |||||||||||||||||| || ||||| |||||||||| |||||||| Sbjct 761 CAACATTAGTGGGTTCGGTCCTCCAGTACGTGTTACCGCACCTTCAACCTGGCCATGGAT 820 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||||| | ||||||||| | | || ||| ||||||||||||||||| |||| Sbjct 821 AGATCACTTGGTTTCGGGTCTACACCCAGCGACTATGTCGCCCTATTCGGACTCGATTTC 880 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 ||||| || ||| | | |||||| || || || || | || |||| | | |||| | Sbjct 881 TCTACGCCTTCCCTATTC-GGTTAAGCTTGCCACTGAATG-TAAGTCGCTGACCCATTAT 938 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| |||| |||||| ||| |||| |||||||| ||||| || Sbjct 939 ACAAAAGGTACGCAGTCACC-----CCT--AAGG-------GCTCCGACTTTTTGTAAGC 984 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| Sbjct 985 ATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGG 1044 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 ||||||| | ||||||||| | |||||||||| ||| || ||||||| ||| ||| Sbjct 1045 TACTTGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 1104 Query 586 CACAC 590 || || Sbjct 1105 CAGAC 1109 >seq555 Length=3447 Score = 322 bits (356), Expect = 2e-85 Identities = 412/559 (74%), Gaps = 33/559 (6%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTC 112 |||||||||||||| | | |||| | || ||||| ||| |||| |||| Sbjct 2656 GCATTCGGAGTTTGTCAGGAATTGGTAGGATTTGACTCCCCCGCATCCAATCAGTAGCTC 2715 Query 113 TACCTCCGGGAAGAAACA----CGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||| || |||| | |||||||||||||||||||||||||||||| || || Sbjct 2716 TACCTCT---AATAAACTATATCACGACGCTGCACCTAAATGCATTTCGGGGAGTACGAG 2772 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 |||| | |||||||||||||||||||||||| ||||||||||||| | ||||||| Sbjct 2773 CTATTTCCGAGTTTGATTGGCCTTTCACCCCTACCCACAGGTCATCCGAAGACTTTTCAA 2832 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | | | |||||||||||||| ||| |||||| ||||||||||||||||| |||| Sbjct 2833 CGTCAACCGGTTCGGTCCTCCATTTGGTGTTACCCAAACTTCAACCTGCCCATGGGTAGA 2892 Query 289 TCACTTCGCTTCGGGTCT--TGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCG 346 |||| | |||| |||| | | || ||| | ||||||||| |||||||||||| Sbjct 2893 TCACACGGTTTCGCGTCTACTATTACTG--ACT-AAGCGCCCTATTAAGACTCGCTTTCG 2949 Query 347 CTACGGCTAC---CCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATT 403 || ||||| | || | ||||||| || | ||||| |||||| ||||||||| Sbjct 2950 CTTCGGCTGCGTACCTGAAGTACTTAACCTTGCCA-GCAACGGTAACTCGTAGGCTCATT 3008 Query 404 CTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAG 463 | ||||||||||||||||||| | | || | |||||||| | |||||| Sbjct 3009 ATGCAAAAGGCACGCCGTCACC---CAACGAA--------TGGGCTCCGACCGCTTGTAG 3057 Query 464 GCACATGGTTTCAGGTACTATTTCACTCCCCGCCA---GGGGTACTTTTCACCTTTCCCT 520 || |||||||||||| |||||||| ||| | | | || |||||||||||||| | Sbjct 3058 GCGTATGGTTTCAGGTTCTATTTCA--CCCTTCTATTCGAAGTGCTTTTCACCTTTCCTT 3115 Query 521 CACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCC 580 ||| |||||||| | ||||||||| |||||||||||| ||| || ||||||| || Sbjct 3116 CACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCC 3175 Query 581 AGATTCACACGAAATTTCA 599 | ||||| || |||||| Sbjct 3176 ATATTCAAACAGGATTTCA 3194 >seq412 Length=5103 Score = 269 bits (298), Expect = 1e-69 Identities = 395/546 (72%), Gaps = 21/546 (4%) Strand=Plus/Plus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 2763 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 2820 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 2821 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 2880 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| |||| || |||||| |||| ||||| |||||||| ||| Sbjct 2881 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCCTAATCACAGCTCATCCCCGTCTTTTG 2940 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | |||||||||| |||||| | |||| ||||| |||| ||||| | Sbjct 2941 CAACAGACGTGGGTTCGGGCCTCCAGTACCTGTTACGGCACCTTCACCCTGGCCATGACT 3000 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | ||||||||| | || ||| || |||||| || |||||| |||| Sbjct 3001 AGATCACCCGGTTTCGGGTCTACTGCCCGCGACT-ATGCGCCCTTATCAGACTCGGTTTC 3059 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 || || || ||| | || |||||| || || || ||| || |||| | | |||| | Sbjct 3060 CCTTCGCCTCCCCTATAC-GGTTAAGCTTGCCAC-GAACAGTAAGTCGCTGACCCATTAT 3117 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| |||| ||||| ||| || |||||| || | ||||| || Sbjct 3118 ACAAAAGGTACGCAGTCAC-----TCCT----TGC---GGAGCTCCTACTGCTTGTACGC 3165 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACG 524 ||| ||||||||| |||||||||||||| | | ||||| |||||| ||||||||||||| Sbjct 3166 ACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 3225 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584 ||||| || | ||||||||| || ||||||||| ||| || ||||||| ||| | Sbjct 3226 GTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATGT 3285 Query 585 TCACAC 590 ||| || Sbjct 3286 TCAGAC 3291 Score = 84.2 bits (92), Expect = 8e-14 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Plus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 2251 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 2308 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 2309 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 2368 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCC 199 |||||||| | ||| |||| || |||||| || Sbjct 2369 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCC 2402 >seq1299 Length=1159 Score = 138 bits (152), Expect = 4e-30 Identities = 123/153 (80%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTAC 505 ||||| || | ||||| ||| | ||||||||| |||||||||||||| | | ||||| | Sbjct 1073 GCTCCTACTGTTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 1014 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||| |||||||||||||||||| || | |||||||||| || ||||||||| ||| Sbjct 1013 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 954 Query 566 ACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 || ||||||| ||| ||||| || || |||| Sbjct 953 GAGGATGGTCCCCCCATATTCAGACAAAGTTTC 921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817567101440