Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq583 453 3e-125
seq412 423 5e-116
seq1299 347 3e-93
seq555 302 1e-79
seq365 230 6e-58
>seq583
Length=3271
Score = 453 bits (502), Expect = 3e-125
Identities = 360/416 (87%), Gaps = 15/416 (4%)
Strand=Plus/Plus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| || |||| ||||||||| |||| |||||||||||||||| |
Sbjct 733 CCTATCCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGTCCTCCAGTACG 790
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| |||||| ||||| ||||||| |||| ||||||||| | ||||| |||||||| |
Sbjct 791 T-GTTACCGCACCTT-CAACCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 845
Query 124 CCAGCGACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182
|||||||||| | ||||||| | |||||| ||| | |||||||| ||||||||||||||
Sbjct 846 CCAGCGACTATGTCGCCCTATTCGGACTCGATTT-CTCTACGCCTTCCCTATTCGGTTAA 904
Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 905 GCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CT 961
Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302
||| |||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||
Sbjct 962 AAG--GGCTCCGACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCG 1018
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362
|||||||||||||||||||||||||||||| |||||||||||||| | | ||||||||
Sbjct 1019 GGGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATGATGAGTATTTA 1078
Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
|||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1079 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 1134
>seq412
Length=5103
Score = 423 bits (468), Expect = 5e-116
Identities = 347/411 (84%), Gaps = 11/411 (3%)
Strand=Plus/Plus
Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69
||||| |||| || | ||||| |||| | || ||||||| |||||||| | ||||
Sbjct 2919 CACAGCTCATCCCCGT--CTTTTGCAACAGACGTGGGTTCGGGCCTCCAGTACCT-GTTA 2975
Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129
| ||||| || |||| |||| | |||||| |||||||| |||||||| | ||| |||
Sbjct 2976 CGGCACCTT-CACCCTGGCCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 3031
Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189
|||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| ||
Sbjct 3032 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 3089
Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249
||| | | |||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 3090 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTC--CTTGCGGAG 3147
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3148 CTCCTACTGCTTGTACGCACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 3207
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 3208 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGG 3267
Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||||||||||| |||||||| ||||| ||||| ||| ||||||||
Sbjct 3268 AGGATGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 3318
>seq1299
Length=1159
Score = 347 bits (384), Expect = 3e-93
Identities = 222/240 (93%), Gaps = 5/240 (2%)
Strand=Plus/Minus
Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238
|||||||| || | | | | ||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1138 TTAAGCTT-GCTAGTTAGACTAAGTCGATGACCCATTATACAAGAGGTACGCAGTCACCC 1080
Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298
| ||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TT----GCGGGCTCCTACTGTTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 1024
Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1023 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTA 964
Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 904
>seq555
Length=3447
Score = 302 bits (334), Expect = 1e-79
Identities = 325/415 (78%), Gaps = 14/415 (3%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||||||||| ||| |||||| ||||| | ||||||||||||||| || || |||
Sbjct 2807 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCATTTGGT-GTT 2863
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| |||||||||||| || |||||| | |||||| || ||||| | |
Sbjct 2864 ACCCAAACTT-CAACCTGCCCATGGG-TAGATCACACGGTTT-CGCGTCTACTATT-ACT 2919
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT-ATTCGGTTAAGC 184
||||| ||||||| ||||||||||||| |||| || || | ||| | |||| |
Sbjct 2920 GACTAAGCGCCCTATTAAGACTCGCTTT-CGCTTCGGCTGCGTACCTGAAGTACTTAACC 2978
Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244
|| |||| | ||| ||| | | |||||| ||||||| |||| |||||||||| ||
Sbjct 2979 TT-GCCAGCAACGGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCAACGAA 3037
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|||||||| || ||||||| || || ||||||||| |||||||||| | || | ||
Sbjct 3038 -TGGGCTCCGACCGCTTGTAGGCGTATGGTTTCAGGTTCTATTTCACCCTTCTATTCGAA 3096
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
|| |||||| ||||||| |||| ||||| |||||||||||||| |||| ||||||||||
Sbjct 3097 GTGCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGC 3156
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|||||||||||||||||||||||||| ||| |||| |||| ||| |||||||
Sbjct 3157 CTTGGAGGATGGTCCCCCCATATTCAAACAGGATTTCACGTGTCCCGCCCTACTC 3211
>seq365
Length=5917
Score = 230 bits (254), Expect = 6e-58
Identities = 312/418 (75%), Gaps = 13/418 (3%)
Strand=Plus/Plus
Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63
|| |||||||| |||| || || | |||| |||| ||| |||||||||||||| |
Sbjct 971 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 1028
Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123
| ||||| ||| ||||||| |||| ||||||||| | | || |||||||| |
Sbjct 1029 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 1084
Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182
|||||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | |
Sbjct 1085 AT-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTA 1142
Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-CCAA 240
| | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| || |
Sbjct 1143 ACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACACCTA 1202
Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300
||| | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| |
Sbjct 1203 CAAGG-GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-C 1260
Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
|||||| |||||| ||||||||||||||||||||| | |||||||||| | ||||||
Sbjct 1261 CGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCATCTGGGAGTATT 1320
Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
||| ||| | |||||| || ||||| || ||||||| || |||| |||||
Sbjct 1321 TAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 1378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241577527040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |