Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq583 453 3e-125 seq412 423 5e-116 seq1299 347 3e-93 seq555 302 1e-79 seq365 230 6e-58 >seq583 Length=3271 Score = 453 bits (502), Expect = 3e-125 Identities = 360/416 (87%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || |||| ||||||||| |||| |||||||||||||||| | Sbjct 733 CCTATCCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGTCCTCCAGTACG 790 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| ||||||| |||| ||||||||| | ||||| |||||||| | Sbjct 791 T-GTTACCGCACCTT-CAACCTGGCCAT-GGATAGATCACTTGGTTT-CGGGTCTACA-C 845 Query 124 CCAGCGACTA-GACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||||||| | ||||||| | |||||| ||| | |||||||| |||||||||||||| Sbjct 846 CCAGCGACTATGTCGCCCTATTCGGACTCGATTT-CTCTACGCCTTCCCTATTCGGTTAA 904 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 905 GCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC--CT 961 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 ||| |||||| ||| ||||| |||| |||||||||||||||||||||||||||| ||| Sbjct 962 AAG--GGCTCCGACTTTTTGTAAGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCG 1018 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||| | | |||||||| Sbjct 1019 GGGTTCTTTTCGCCTTTCCCTCACGGTACTTGTTCACTATCGGTCGATGATGAGTATTTA 1078 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| Sbjct 1079 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGGTTTCTCGTGCCCCGCCCTACT 1134 >seq412 Length=5103 Score = 423 bits (468), Expect = 5e-116 Identities = 347/411 (84%), Gaps = 11/411 (3%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| || | ||||| |||| | || ||||||| |||||||| | |||| Sbjct 2919 CACAGCTCATCCCCGT--CTTTTGCAACAGACGTGGGTTCGGGCCTCCAGTACCT-GTTA 2975 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 | ||||| || |||| |||| | |||||| |||||||| |||||||| | ||| ||| Sbjct 2976 CGGCACCTT-CACCCTGGCCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 3031 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189 |||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| || Sbjct 3032 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 3089 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||| | | |||||||||||||||||||||||||||||||||||||| | | | | Sbjct 3090 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTC--CTTGCGGAG 3147 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 3148 CTCCTACTGCTTGTACGCACACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 3207 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 3208 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGG 3267 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 3268 AGGATGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 3318 >seq1299 Length=1159 Score = 347 bits (384), Expect = 3e-93 Identities = 222/240 (93%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 179 TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC 238 |||||||| || | | | | ||||||| ||||||||||||||| |||||||||||||||| Sbjct 1138 TTAAGCTT-GCTAGTTAGACTAAGTCGATGACCCATTATACAAGAGGTACGCAGTCACCC 1080 Query 239 AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | ||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TT----GCGGGCTCCTACTGTTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 1024 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1023 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGTAGTA 964 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 904 >seq555 Length=3447 Score = 302 bits (334), Expect = 1e-79 Identities = 325/415 (78%), Gaps = 14/415 (3%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||||||||| ||| |||||| ||||| | ||||||||||||||| || || ||| Sbjct 2807 CCACAGGTCAT-CCGAAGACTTTT-CAACGTCAACCGGTTCGGTCCTCCATTTGGT-GTT 2863 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| |||||||||||| || |||||| | |||||| || ||||| | | Sbjct 2864 ACCCAAACTT-CAACCTGCCCATGGG-TAGATCACACGGTTT-CGCGTCTACTATT-ACT 2919 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCT-ATTCGGTTAAGC 184 ||||| ||||||| ||||||||||||| |||| || || | ||| | |||| | Sbjct 2920 GACTAAGCGCCCTATTAAGACTCGCTTT-CGCTTCGGCTGCGTACCTGAAGTACTTAACC 2978 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || |||| | ||| ||| | | |||||| ||||||| |||| |||||||||| || Sbjct 2979 TT-GCCAGCAACGGTAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCCAACGAA 3037 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||||||| || ||||||| || || ||||||||| |||||||||| | || | || Sbjct 3038 -TGGGCTCCGACCGCTTGTAGGCGTATGGTTTCAGGTTCTATTTCACCCTTCTATTCGAA 3096 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 || |||||| ||||||| |||| ||||| |||||||||||||| |||| |||||||||| Sbjct 3097 GTGCTTTTCACCTTTCCTTCACAGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGC 3156 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||||||||||||||||||||||||| ||| |||| |||| ||| ||||||| Sbjct 3157 CTTGGAGGATGGTCCCCCCATATTCAAACAGGATTTCACGTGTCCCGCCCTACTC 3211 >seq365 Length=5917 Score = 230 bits (254), Expect = 6e-58 Identities = 312/418 (75%), Gaps = 13/418 (3%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 971 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 1028 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| ||||||| |||| ||||||||| | | || |||||||| | Sbjct 1029 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 1084 Query 124 CCAGCGACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||| | ||||||| | ||||||||||| ||||||| || ||| | ||| | | Sbjct 1085 AT-GCGACTGAATCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTA 1142 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-CCAA 240 | | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| || | Sbjct 1143 ACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACACCTA 1202 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||| | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| | Sbjct 1203 CAAGG-GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-C 1260 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| ||||||||||||||||||||| | |||||||||| | |||||| Sbjct 1261 CGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCATCTGGGAGTATT 1320 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||| ||| | |||||| || ||||| || ||||||| || |||| ||||| Sbjct 1321 TAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 1378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241577527040