Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001383.1 Length=561 Score E Sequences producing significant alignments: (Bits) Value seq564 114 4e-23 >seq564 Length=3373 Score = 114 bits (126), Expect = 4e-23 Identities = 234/338 (69%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 91 GACGAAGTTCTGCTCCGTGAGGACGGCCATCTGACTTAGATAATTTAAGGACGCCTCACC 150 ||||||||||||| |||| ||| |||||||||| | | | || | || || Sbjct 1836 GACGAAGTTCTGCACCGTAAGGCCGGCCATCTGGGTGAAGGTCGACATGGTGGTTTCGCC 1895 Query 151 GCTGTTGTTCTGCCAGTTGGTATTGGTCATGAAACTGACGGCGGTATTAAACGCCTAGGT 210 || | ||||||||||||||| ||||||| ||| ||||||||||| || || ||| |||| Sbjct 1896 GCCATAGTTCTGCCAGTTGGTGTTGGTCACGAAGCTGACGGCGGTGTTGAAGGCC-AGGT 1954 Query 211 CCATTCCTGGCCCGGC-AGGTTTTGCGGGTTCAGCGGGAGGGAGCCTTGAAATAACAGAA 269 | | | ||| | | |||||||||| ||| |||| ||| || | ||| | Sbjct 1955 GCGGGCTGAGACCGTCAAACCCCTGCGGGTTCATCGGCAGGGCGCCCTGCAGCCGCAGCA 2014 Query 270 TAGAGAACAGCAGCAGGAAGCCGGCGAGGTTGAATGCGAGCA-AG-GCCAGCATGTACTT 327 | | |||||||||||||| || |||||||| || |||| || ||| || || Sbjct 2015 GGCCGTAGAGCAGCAGGAAGCCCGCCAGGTTGAAGGCCAGCAGAGCGCCGACA--TAGCC 2072 Query 328 CTGCCAGCTTTGTTCCTGC-TGTGCGTCCACACCCGACAG-GCGATAACAGGCGCTTTCC 385 | |||||| || |||| ||| | || |||| | | |||||| || || || Sbjct 2073 CAGCCAGCCCTG--GCTGCGCGTGGGGTCAACCCCGGCGGCGCGATAGAAGAGGCCCTCA 2130 Query 386 ACCGGCCCCAGCACCGGGCTGAGCCAGGTGCGCTGGCC 423 |||||| |||||||||| |||||||| |||| ||| Sbjct 2131 ACCGGCTTCAGCACCGGGTCCAGCCAGGTCCGCTCGCC 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1692769360320