Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq365 269 5e-70 seq400 248 2e-63 seq129 235 1e-59 seq902 187 5e-45 seq819 187 5e-45 seq1215 176 9e-42 seq1775 154 3e-35 seq1666 150 4e-34 seq1178 129 1e-27 >seq365 Length=5917 Score = 269 bits (298), Expect = 5e-70 Identities = 258/326 (79%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| || | ||||||||||||||| ||||||||||||||||||||| Sbjct 3428 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 3487 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| | Sbjct 3488 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 3547 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || |||| ||||||||| | || || ||||||||| ||||| | Sbjct 3548 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCCGAA 3607 Query 181 GCGATAAATCTTTGGTCAAAGA-ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 |||||||||||| | | | | |||| | | |||| ||| | ||||||| Sbjct 3608 CCGATAAATCTTTCCACCCACACACCATGCGGTGATGGGACA-TATCCAGTATTAGACGC 3666 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| |||| ||| | |||||||| |||||||||||||||||||| || Sbjct 3667 CGTTTCCAGCGCTTATCCCAGAGTTCGGGGCAGGTTACTCACGTGTTACTCACCCGTTCG 3726 Query 300 CCACTAAGCTATATATCCAGCAAGCT 325 ||||| || | | |||||||||| Sbjct 3727 CCACT---CT-TCCACCCAGCAAGCT 3748 >seq400 Length=5312 Score = 248 bits (274), Expect = 2e-63 Identities = 240/306 (78%), Gaps = 17/306 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||||| ||||| |||| ||||||| |||| || ||||||||||||||||||||| Sbjct 1844 GGCATGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAG 1903 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 1904 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACTGAT 1963 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| ||| ||| ||||||||||| |||||| | |||| ||| ||| Sbjct 1964 CGTCGCCTTGGTGAGCTTTTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAATG 2023 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||||||||||||| | ||| | || ||||| |||||||||| Sbjct 2024 GCGATAAATCTTT--CCCCCGAAGG--GC---------ACATT---CGGTATTAGCACAA 2067 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||| |||||||| | ||||||| ||| | |||||||||||||||||||||| Sbjct 2068 GTTTCCCTGAGTTATTCCGAACCAAAAGGCACGTT-CCCACGTGTTACTCACCCGTCCGC 2126 Query 301 CACTAA 306 |||||| Sbjct 2127 CACTAA 2132 >seq129 Length=23434 Score = 235 bits (260), Expect = 1e-59 Identities = 230/294 (78%), Gaps = 17/294 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| |||| || ||||||||||||||||||||||||| ||||||| Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 |||||||||||||||||||| | ||| |||||||| || ||||| |||||||| |||||| Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 | || |||| ||||||||||| |||||| | |||| ||| ||| |||||||||||| Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATAAATCTT 23253 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | | ||| | || ||||| ||| |||| | |||||||| | Sbjct 23252 T--CCCCCGAAGG--GC---------ACATT---CGGCATTACCACCCGTTTCCAGGAGC 23209 Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306 |||||| | ||||||| ||| | |||||||||||||||||||||||||||| Sbjct 23208 TATTCCGAACCTAAAGGCACGTT-CCCACGTGTTACTCACCCGTCCGCCACTAA 23156 >seq902 Length=1850 Score = 187 bits (206), Expect = 5e-45 Identities = 239/327 (73%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| ||| || |||||| |||||| || ||||||||||||||||| Sbjct 153 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 212 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | | |||||||| | ||| || Sbjct 213 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAGACAT 272 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| | | ||||||| ||||| |||||||||||||| Sbjct 273 CGTCGCCTTGGTGAGCCGTTACCCCGCCAACTAGCTAATGTCACGCGAGCCCATCTTAAT 332 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | |||||| |||| || | || |||| ||||| || ||||||||| ||| | | Sbjct 333 CCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTATGCGGTGTTA--ATCC 390 Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 | |||| | ||| || || |||| ||||||| ||| ||||| ||||||| | Sbjct 391 GAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 450 Query 299 GCCACTAAGCTATATATCCAGCAAGCT 325 |||||| | |||||||||||||| Sbjct 451 GCCACT----TTCATATCCAGCAAGCT 473 >seq819 Length=2095 Score = 187 bits (206), Expect = 5e-45 Identities = 227/307 (74%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||||| ||||||||| |||||| || ||||||||||||||||| Sbjct 424 GGCATGGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 365 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | ||| |||||||| || ||| ||| Sbjct 364 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAAGAT 305 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT---T 177 | | |||||| ||| ||| | |||||||| |||||| |||| |||||||| | Sbjct 304 CACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATCTTGCGCGTGCCCATCTCTAT 245 Query 178 TCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCG 237 || || | ||| ||| | |||||| | | | | |||||| ||||||| Sbjct 244 CCACCG---GAGTTTTCAATAAATCAAGATGCCTTGGT-TTATATTATGGGGTATTAATC 189 Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297 ||| |||| ||| | ||| || || ||||| ||||||| |||||||| | ||||||| Sbjct 188 TTCCTTTCGAAAGGCTATCCCCCTGATAAAGGTAGGTTGCACACGTGTTCCGCACCCGTA 129 Query 298 CGCCACT 304 |||| || Sbjct 128 CGCCGCT 122 >seq1215 Length=1293 Score = 176 bits (194), Expect = 9e-42 Identities = 193/256 (75%), Gaps = 17/256 (7%) Strand=Plus/Plus Query 51 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCC 110 |||| |||||||||||||||||||||||||||||| |||||| | ||| |||||||| || Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60 Query 111 GGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 |||| |||||||| ||||||| || |||| ||||||||||| |||||| |||| || Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120 Query 171 CCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGT 230 ||||| | |||||||||||| ||| || | || ||| |||| Sbjct 121 CCATCCTATTCCGATAAATCTTTCCCCAA--AAGG--GC------------GTATCCGGT 164 Query 231 ATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTC 290 |||||| |||||||| |||||||| | || ||||| | |||||||||||| Sbjct 165 ATTAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTT-CCCACGTGTTACTC 223 Query 291 ACCCGTCCGCCACTAA 306 ||||||| |||||||| Sbjct 224 ACCCGTCTGCCACTAA 239 >seq1775 Length=549 Score = 154 bits (170), Expect = 3e-35 Identities = 150/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| ||||| || | ||||||| |||||| || |||||||||||||||||| Sbjct 406 GGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 347 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||| |||||||||||| ||| ||||| | || |||||||| | ||||| || Sbjct 346 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCAT 287 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| || ||| || |||||||| ||||| || ||| || |||||| | Sbjct 286 CATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTTATA 227 Query 181 GCGATAAATCTTT 193 | || ||||||| Sbjct 226 CCAATTAATCTTT 214 >seq1666 Length=670 Score = 150 bits (166), Expect = 4e-34 Identities = 187/253 (74%), Gaps = 5/253 (2%) Strand=Plus/Minus Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112 ||||||||||||||||||||||||||||||||| |||||| | || |||||||| || | Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611 Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 |||| ||||||||||||||| ||| ||||| |||||||||||||||| ||| |||| Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATCAGCCG 551 Query 173 ATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTA 231 ||| |||| | | |||| || | |||||| || | |||||||| Sbjct 550 CTCTAGTAGCGCAAGGCCCGAAGGTC---CCCTGCTTTCATCCTTAGATCTCATGCGGTA 494 Query 232 TTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291 ||||| |||| | ||||| || | || ||||| ||| | | || ||||||| Sbjct 493 TTAGCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTT-CCGATGTATTACTCA 435 Query 292 CCCGTCCGCCACT 304 ||||| ||||||| Sbjct 434 CCCGTTCGCCACT 422 >seq1178 Length=1334 Score = 129 bits (142), Expect = 1e-27 Identities = 166/230 (72%), Gaps = 17/230 (7%) Strand=Plus/Plus Query 75 TCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGG 134 ||||||||||| |||||| | ||| |||||||| || |||| |||||||| |||||| | Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60 Query 135 GCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTG 194 || |||| | ||||||||| |||||| |||| || ||||| | |||||||||||| Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATAAATCTTT- 119 Query 195 GTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTA 254 || | | | | ||| |||||||||| |||||||||| |||| Sbjct 120 --------------CCCCCGTAGGGC-GTATACGGTATTAGCAGTCGTTTCCAACTGTTA 164 Query 255 TTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||| ||||| || || | |||| |||||||||||||| ||| || Sbjct 165 TTCCGTAGCAAAAGGTAGATT-CCCACGCGTTACTCACCCGTCTGCCGCT 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998381928960