Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq365 269 5e-70
seq400 248 2e-63
seq129 235 1e-59
seq902 187 5e-45
seq819 187 5e-45
seq1215 176 9e-42
seq1775 154 3e-35
seq1666 150 4e-34
seq1178 129 1e-27
>seq365
Length=5917
Score = 269 bits (298), Expect = 5e-70
Identities = 258/326 (79%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| ||||||||||| || | ||||||||||||||| |||||||||||||||||||||
Sbjct 3428 GGCGTTGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 3487
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||| |
Sbjct 3488 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCACCCTCTCAGGCCGGCTACCCGT 3547
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| || |||| ||||||||| | || || ||||||||| ||||| |
Sbjct 3548 CGTCGCCTTGGTGAGCCATTACCTCACCAACAAGCTGATAGGCCGCGAGTCCATCCCGAA 3607
Query 181 GCGATAAATCTTTGGTCAAAGA-ATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|||||||||||| | | | | |||| | | |||| ||| | |||||||
Sbjct 3608 CCGATAAATCTTTCCACCCACACACCATGCGGTGATGGGACA-TATCCAGTATTAGACGC 3666
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| |||| ||| | |||||||| |||||||||||||||||||| ||
Sbjct 3667 CGTTTCCAGCGCTTATCCCAGAGTTCGGGGCAGGTTACTCACGTGTTACTCACCCGTTCG 3726
Query 300 CCACTAAGCTATATATCCAGCAAGCT 325
||||| || | | ||||||||||
Sbjct 3727 CCACT---CT-TCCACCCAGCAAGCT 3748
>seq400
Length=5312
Score = 248 bits (274), Expect = 2e-63
Identities = 240/306 (78%), Gaps = 17/306 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||||| ||||| |||| ||||||| |||| || |||||||||||||||||||||
Sbjct 1844 GGCATGGCTGCGTCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAG 1903
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||
Sbjct 1904 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTACTGAT 1963
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| ||| ||| ||||||||||| |||||| | |||| ||| |||
Sbjct 1964 CGTCGCCTTGGTGAGCTTTTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAATG 2023
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240
||||||||||||| | ||| | || ||||| ||||||||||
Sbjct 2024 GCGATAAATCTTT--CCCCCGAAGG--GC---------ACATT---CGGTATTAGCACAA 2067
Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300
|||||| |||||||| | ||||||| ||| | ||||||||||||||||||||||
Sbjct 2068 GTTTCCCTGAGTTATTCCGAACCAAAAGGCACGTT-CCCACGTGTTACTCACCCGTCCGC 2126
Query 301 CACTAA 306
||||||
Sbjct 2127 CACTAA 2132
>seq129
Length=23434
Score = 235 bits (260), Expect = 1e-59
Identities = 230/294 (78%), Gaps = 17/294 (6%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| |||| || ||||||||||||||||||||||||| |||||||
Sbjct 23432 TCAGGCTTTCGCCCATTGCGCAAGATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCG 23373
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
|||||||||||||||||||| | ||| |||||||| || ||||| |||||||| ||||||
Sbjct 23372 TGTCTCAGTCCCAATGTGGCTGGTCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGT 23313
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192
| || |||| ||||||||||| |||||| | |||| ||| ||| ||||||||||||
Sbjct 23312 GAGCCATTACCTCACCAACTAGCTAATCAGACGCGGGCCGCTCTAAAGGCGATAAATCTT 23253
Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252
| | ||| | || ||||| ||| |||| | |||||||| |
Sbjct 23252 T--CCCCCGAAGG--GC---------ACATT---CGGCATTACCACCCGTTTCCAGGAGC 23209
Query 253 TATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306
|||||| | ||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 23208 TATTCCGAACCTAAAGGCACGTT-CCCACGTGTTACTCACCCGTCCGCCACTAA 23156
>seq902
Length=1850
Score = 187 bits (206), Expect = 5e-45
Identities = 239/327 (73%), Gaps = 8/327 (2%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||| ||| || |||||| |||||| || |||||||||||||||||
Sbjct 153 GGCATGGCTGGTTCAGAGTTCCCTCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 212
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | | |||||||| | ||| ||
Sbjct 213 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATTCTCCTCTCAGAGCCCCTAGACAT 272
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
||||| ||||||| || ||| | | ||||||| ||||| ||||||||||||||
Sbjct 273 CGTCGCCTTGGTGAGCCGTTACCCCGCCAACTAGCTAATGTCACGCGAGCCCATCTTAAT 332
Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240
| |||||| |||| || | || |||| ||||| || ||||||||| ||| | |
Sbjct 333 CCTATAAATATTTGAACATTGGATAATGCTATCCTGTGTTTTTATGCGGTGTTA--ATCC 390
Query 241 G--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298
| |||| | ||| || || |||| ||||||| ||| ||||| ||||||| |
Sbjct 391 GAATTTCTTCGGGCTATCCCCCTGATTAAGGTAGGTTGCATACGCGTTACGCACCCGTGC 450
Query 299 GCCACTAAGCTATATATCCAGCAAGCT 325
|||||| | ||||||||||||||
Sbjct 451 GCCACT----TTCATATCCAGCAAGCT 473
>seq819
Length=2095
Score = 187 bits (206), Expect = 5e-45
Identities = 227/307 (74%), Gaps = 7/307 (2%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||||| ||||||||| |||||| || |||||||||||||||||
Sbjct 424 GGCATGGCTGGTTCAGGGTTGCCCCCATTGACCAATATTCCTTACTGCTGCCTCCCGTAG 365
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | ||| |||||||| || ||| |||
Sbjct 364 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCTCAGGCCCCCTAAAGAT 305
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT---T 177
| | |||||| ||| ||| | |||||||| |||||| |||| |||||||| |
Sbjct 304 CACTGACTTGGTAGGCCGTTACCCTACCAACTATCTAATCTTGCGCGTGCCCATCTCTAT 245
Query 178 TCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCG 237
|| || | ||| ||| | |||||| | | | | |||||| |||||||
Sbjct 244 CCACCG---GAGTTTTCAATAAATCAAGATGCCTTGGT-TTATATTATGGGGTATTAATC 189
Query 238 TTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTC 297
||| |||| ||| | ||| || || ||||| ||||||| |||||||| | |||||||
Sbjct 188 TTCCTTTCGAAAGGCTATCCCCCTGATAAAGGTAGGTTGCACACGTGTTCCGCACCCGTA 129
Query 298 CGCCACT 304
|||| ||
Sbjct 128 CGCCGCT 122
>seq1215
Length=1293
Score = 176 bits (194), Expect = 9e-42
Identities = 193/256 (75%), Gaps = 17/256 (7%)
Strand=Plus/Plus
Query 51 CCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCC 110
|||| |||||||||||||||||||||||||||||| |||||| | ||| |||||||| ||
Sbjct 1 CCTCTCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACC 60
Query 111 GGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170
|||| |||||||| ||||||| || |||| ||||||||||| |||||| |||| ||
Sbjct 61 AGCTAAAGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCTTACGCGGGC 120
Query 171 CCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGT 230
||||| | |||||||||||| ||| || | || ||| ||||
Sbjct 121 CCATCCTATTCCGATAAATCTTTCCCCAA--AAGG--GC------------GTATCCGGT 164
Query 231 ATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTC 290
|||||| |||||||| |||||||| | || ||||| | ||||||||||||
Sbjct 165 ATTAGCACACGTTTCCATGTGTTATTCCGAAGAACAGGGTAGGTT-CCCACGTGTTACTC 223
Query 291 ACCCGTCCGCCACTAA 306
||||||| ||||||||
Sbjct 224 ACCCGTCTGCCACTAA 239
>seq1775
Length=549
Score = 154 bits (170), Expect = 3e-35
Identities = 150/193 (78%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| ||||| || | ||||||| |||||| || ||||||||||||||||||
Sbjct 406 GGCATGGCTGGTTCAGGCTTGCGCCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 347
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||||| |||||||||||| ||| ||||| | || |||||||| | ||||| ||
Sbjct 346 GAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCTCAGGACCCCTACCCAT 287
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| || ||| || |||||||| ||||| || ||| || |||||| |
Sbjct 286 CATCGTCTTGGTAAGCCGTTACCTTACCAACTAACTAATGGGACGCATGCTCATCTTATA 227
Query 181 GCGATAAATCTTT 193
| || |||||||
Sbjct 226 CCAATTAATCTTT 214
>seq1666
Length=670
Score = 150 bits (166), Expect = 4e-34
Identities = 187/253 (74%), Gaps = 5/253 (2%)
Strand=Plus/Minus
Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112
||||||||||||||||||||||||||||||||| |||||| | || |||||||| || |
Sbjct 670 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGGTCGTCCTCTCAGACCAG 611
Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172
|||| ||||||||||||||| ||| ||||| |||||||||||||||| ||| ||||
Sbjct 610 CTACAGATCGTCGGCTTGGTAAGCTTTTATCCCACCAACTACCTAATCTGCCATCAGCCG 551
Query 173 ATCTTTCAGCG-ATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTA 231
||| |||| | | |||| || | |||||| || | ||||||||
Sbjct 550 CTCTAGTAGCGCAAGGCCCGAAGGTC---CCCTGCTTTCATCCTTAGATCTCATGCGGTA 494
Query 232 TTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291
||||| |||| | ||||| || | || ||||| ||| | | || |||||||
Sbjct 493 TTAGCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTT-CCGATGTATTACTCA 435
Query 292 CCCGTCCGCCACT 304
||||| |||||||
Sbjct 434 CCCGTTCGCCACT 422
>seq1178
Length=1334
Score = 129 bits (142), Expect = 1e-27
Identities = 166/230 (72%), Gaps = 17/230 (7%)
Strand=Plus/Plus
Query 75 TCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGG 134
||||||||||| |||||| | ||| |||||||| || |||| |||||||| |||||| |
Sbjct 1 TCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAAGATCGTCGCCTTGGTAG 60
Query 135 GCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTG 194
|| |||| | ||||||||| |||||| |||| || ||||| | ||||||||||||
Sbjct 61 GCCATTACCCCACCAACTAGCTAATCTTACGCGGGCTCATCTAAAACCGATAAATCTTT- 119
Query 195 GTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTA 254
|| | | | | ||| |||||||||| |||||||||| ||||
Sbjct 120 --------------CCCCCGTAGGGC-GTATACGGTATTAGCAGTCGTTTCCAACTGTTA 164
Query 255 TTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
|||| ||||| || || | |||| |||||||||||||| ||| ||
Sbjct 165 TTCCGTAGCAAAAGGTAGATT-CCCACGCGTTACTCACCCGTCTGCCGCT 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998381928960
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