Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq382 273 5e-71 seq155 192 1e-46 seq240 168 2e-39 >seq382 Length=5503 Score = 273 bits (302), Expect = 5e-71 Identities = 302/397 (76%), Gaps = 4/397 (1%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| |||| |||| |||| ||||||||||||||||||||| ||||| || Sbjct 877 CGACGGCACCGGCCCGGTCTGGACGGGCACCCTGTTCCCGTTCCTGTTCATTACCATCGC 818 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 817 CTGTGGCGCGGTCTCGGGCTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGCTGCT 758 Query 121 CGCCAGTGAGAGCCATG-CCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179 | || |||| ||| |||| | ||||| ||||||| ||||||| || |||| Sbjct 757 GGACAACGAGAACCAGATCCCGCTG-ATCGGCTACGGCGCCATGCTGTGTGAAAGCTTCG 699 Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGA 239 ||||||||||||| || | |||||| | ||| | || || | ||| ||||||||||||| Sbjct 698 TGGCCATCATGGCCCTGATCGCCGCCACCGTGCTGGACCCGGCCGTCTACTTCGCCATGA 639 Query 240 ACAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTT 299 |||||||||| ||| | ||||| | | | || | | | || |||| | | Sbjct 638 ACAGCCCGGCCGCCGTGATCGGCGACAATGCGGCCTCGGCCGCCGCCGCCGTGGCCCAGT 579 Query 300 GGGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTT-GCCCACAATATCGGTGAAACC 358 ||||||| ||| || || | | |||| || ||| ||| | | |||| ||| | Sbjct 578 GGGGCTTCCACATCACCCCGGCCGAGCTG-GAGCAGTTGGCCAAGGACGTCGGCGAACAC 520 Query 359 ACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 |||||||| | || || |||||||| ||||| |||| Sbjct 519 TCCATCCTGTCGCGCGCGGGCGGCGCCCCGACGCTGG 483 >seq155 Length=18200 Score = 192 bits (212), Expect = 1e-46 Identities = 202/263 (77%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 |||||| ||||| |||| | ||||| ||||||||| ||||||||||||||||| || Sbjct 8012 CGACGGGACCGGGCCGGTCTTCTCGGGCGCCCTGTTCCCCTTCCTGTTCATCACCATCGC 8071 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||| || || || ||||| ||||| || |||||||| || ||||||||||||||| |||| Sbjct 8072 CTGCGGGGCCGTGTCGGGCTTCCACGCCCTGATCTCATCCGGCACCACGCCCAAGCTGCT 8131 Query 121 CGCCAGTGAGAGCCA-TGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179 | | ||| ||| |||| | ||||| || |||| ||||||| ||| |||| Sbjct 8132 GGAGAACGAGGACCAGATCCCGCT-GATCGGCTATGGCGCCATGCTGTGCGAGAGCTTCG 8190 Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGA 239 |||| ||||||||| || | |||||| | ||| | || || | ||| || |||||||||| Sbjct 8191 TGGCGATCATGGCGCTGATCGCCGCCACCGTGCTGGACCCGGCCGTCTATTTCGCCATGA 8250 Query 240 ACAGCCCGGCTGCCATTGTCGGC 262 ||||||||| ||| | ||||| Sbjct 8251 ACAGCCCGGTCGCCGTCATCGGC 8273 >seq240 Length=10080 Score = 168 bits (186), Expect = 2e-39 Identities = 174/224 (78%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 |||||||||||| |||| | ||||| ||||||||| ||||||||||||||||| || Sbjct 3608 CGACGGCACCGGACCGGTCTTCTCGGGCGCCCTGTTCCCCTTCCTGTTCATCACCATCGC 3549 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||| || || || ||||| ||||| || |||||||| || ||||||||||||||| |||| Sbjct 3548 CTGCGGGGCTGTGTCGGGCTTCCACGCCCTGATCTCGTCCGGCACCACGCCCAAGCTGCT 3489 Query 121 CGCCAGTGAGAGCCATG-CCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179 | | |||| ||| |||| | ||||| ||||||| ||||||| || |||| Sbjct 3488 GGAGAACGAGAACCAGATCCCGCTG-ATCGGCTACGGCGCCATGCTGTGTGAAAGCTTCG 3430 Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGC 223 ||||||||||||| || | |||||| | ||| | || |||||| Sbjct 3429 TGGCCATCATGGCCCTGATCGCCGCCACCGTGCTGGA-CCCGGC 3387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1161578975040