Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001449.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
seq382 273 5e-71
seq155 192 1e-46
seq240 168 2e-39
>seq382
Length=5503
Score = 273 bits (302), Expect = 5e-71
Identities = 302/397 (76%), Gaps = 4/397 (1%)
Strand=Plus/Minus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
||||||||||||| |||| |||| |||| ||||||||||||||||||||| ||||| ||
Sbjct 877 CGACGGCACCGGCCCGGTCTGGACGGGCACCCTGTTCCCGTTCCTGTTCATTACCATCGC 818
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 CTGTGGCGCGGTCTCGGGCTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGCTGCT 758
Query 121 CGCCAGTGAGAGCCATG-CCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179
| || |||| ||| |||| | ||||| ||||||| ||||||| || ||||
Sbjct 757 GGACAACGAGAACCAGATCCCGCTG-ATCGGCTACGGCGCCATGCTGTGTGAAAGCTTCG 699
Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGA 239
||||||||||||| || | |||||| | ||| | || || | ||| |||||||||||||
Sbjct 698 TGGCCATCATGGCCCTGATCGCCGCCACCGTGCTGGACCCGGCCGTCTACTTCGCCATGA 639
Query 240 ACAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTT 299
|||||||||| ||| | ||||| | | | || | | | || |||| | |
Sbjct 638 ACAGCCCGGCCGCCGTGATCGGCGACAATGCGGCCTCGGCCGCCGCCGCCGTGGCCCAGT 579
Query 300 GGGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTT-GCCCACAATATCGGTGAAACC 358
||||||| ||| || || | | |||| || ||| ||| | | |||| ||| |
Sbjct 578 GGGGCTTCCACATCACCCCGGCCGAGCTG-GAGCAGTTGGCCAAGGACGTCGGCGAACAC 520
Query 359 ACCATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395
|||||||| | || || |||||||| ||||| ||||
Sbjct 519 TCCATCCTGTCGCGCGCGGGCGGCGCCCCGACGCTGG 483
>seq155
Length=18200
Score = 192 bits (212), Expect = 1e-46
Identities = 202/263 (77%), Gaps = 2/263 (1%)
Strand=Plus/Plus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
|||||| ||||| |||| | ||||| ||||||||| ||||||||||||||||| ||
Sbjct 8012 CGACGGGACCGGGCCGGTCTTCTCGGGCGCCCTGTTCCCCTTCCTGTTCATCACCATCGC 8071
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
||| || || || ||||| ||||| || |||||||| || ||||||||||||||| ||||
Sbjct 8072 CTGCGGGGCCGTGTCGGGCTTCCACGCCCTGATCTCATCCGGCACCACGCCCAAGCTGCT 8131
Query 121 CGCCAGTGAGAGCCA-TGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179
| | ||| ||| |||| | ||||| || |||| ||||||| ||| ||||
Sbjct 8132 GGAGAACGAGGACCAGATCCCGCT-GATCGGCTATGGCGCCATGCTGTGCGAGAGCTTCG 8190
Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGA 239
|||| ||||||||| || | |||||| | ||| | || || | ||| || ||||||||||
Sbjct 8191 TGGCGATCATGGCGCTGATCGCCGCCACCGTGCTGGACCCGGCCGTCTATTTCGCCATGA 8250
Query 240 ACAGCCCGGCTGCCATTGTCGGC 262
||||||||| ||| | |||||
Sbjct 8251 ACAGCCCGGTCGCCGTCATCGGC 8273
>seq240
Length=10080
Score = 168 bits (186), Expect = 2e-39
Identities = 174/224 (78%), Gaps = 3/224 (1%)
Strand=Plus/Minus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
|||||||||||| |||| | ||||| ||||||||| ||||||||||||||||| ||
Sbjct 3608 CGACGGCACCGGACCGGTCTTCTCGGGCGCCCTGTTCCCCTTCCTGTTCATCACCATCGC 3549
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
||| || || || ||||| ||||| || |||||||| || ||||||||||||||| ||||
Sbjct 3548 CTGCGGGGCTGTGTCGGGCTTCCACGCCCTGATCTCGTCCGGCACCACGCCCAAGCTGCT 3489
Query 121 CGCCAGTGAGAGCCATG-CCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCG 179
| | |||| ||| |||| | ||||| ||||||| ||||||| || ||||
Sbjct 3488 GGAGAACGAGAACCAGATCCCGCTG-ATCGGCTACGGCGCCATGCTGTGTGAAAGCTTCG 3430
Query 180 TGGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGC 223
||||||||||||| || | |||||| | ||| | || ||||||
Sbjct 3429 TGGCCATCATGGCCCTGATCGCCGCCACCGTGCTGGA-CCCGGC 3387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1161578975040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |