Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq701 426 4e-117 seq495 118 2e-24 >seq701 Length=2661 Score = 426 bits (472), Expect = 4e-117 Identities = 331/394 (84%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| |||||||||||||||||||||||||||||| || ||||| || || | Sbjct 1830 CGATGGTCAGCAGCTCGCCGCCCACCTGGGTCCACGCCAGGCCGGTTACCTGCCCTACCT 1889 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | ||||||||||||||||||||||||| ||| ||||| ||||| ||| | ||||| ||| Sbjct 1890 GGTCCTGCTGCTCGGCCAGGCCGTAGCGGAACTTGCGAACGCCCAGGTAATGCTCGAGGT 1949 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||| | |||||| || | | | || | |||||||||||||| |||||| Sbjct 1950 TGTCACCATCGACCTTGACGGCCACCTGCTTGAGCCCGGCATGTTCCTTGACGACCTTGC 2009 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2010 GGCAGATCTTGGCGATCTGGCGCTCCAGGCCCCGCACACCGGCTTCGCGGGTGTAGTAGC 2069 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 ||| |||||||||||| | | | || | || | |||||||||||||||||| |||| Sbjct 2070 GGATGATGTCGCGGATGGCGGCAGTGTCGATCTCCAGCTCGCCCTTCTTCAGGCCGTTGG 2129 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 || ||||||||||||| ||||||||||| || ||||||||||||||||||||||||| Sbjct 2130 CCTTGATCTGCTTGGGCGAGAGGTACTTGACCGCAATGTTGATCTTCTCGTCTTCGGTGT 2189 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 | |||||||| |||||||||||||||||||| || Sbjct 2190 ACCCCGGCAGACGAATCACTTCCATCCGGTCGAG 2223 >seq495 Length=4016 Score = 118 bits (130), Expect = 2e-24 Identities = 272/402 (68%), Gaps = 16/402 (4%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGA--CCGAC 58 |||||||||| | |||||||| | || |||||| |||||||| |||| ||| ||||| Sbjct 222 CGATGGTCAGGATGTCGCCGCCGAACTCGGTCCAGGCCAGGCCGGTGA--TGATCCCGAC 279 Query 59 TTGATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAG 118 ||||||| || || | | |||||||| | | || || ||||| | | | |||| Sbjct 280 CTGATCCTCCTCGTCCGTCTCGCCGTAGCGGTACTTCCGAACGCCCGCGTACTTGGCCAG 339 Query 119 GGAGTCGGCCGTGACCTTCACCGAGAAG-CGTTTTTCCAGCGCATGTTCCTTGACCGCCT 177 ||| | ||| | | |||| | | || ||| | ||| | | ||||||| Sbjct 340 CCGCTCGTCGTCGACGGTGATCGAGGCGGCCTTGGTCCTGGCCATCTCGCGC-ACCGCCT 398 Query 178 TGCGGC--AGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTA 235 ||||| || | | || | |||||| || || || |||||||| |||||||| Sbjct 399 TGCGGGCTAGGCCGCCCAGAGC--GCGCTCGAGCGAGCGGACGCCGGCTTCCCGGGTGTA 456 Query 236 GTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATC---TCGCCCTTCTTCAG 292 |||||||| | ||||| ||||| || | | ||||| ||||| | |||||| Sbjct 457 GTAGCGGATCAGATCGCGAATCGTCTCGTCCGGGA---CGATCAGCTCGCCTTCCTTCAG 513 Query 293 GCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTC 352 ||||| | || | ||| |||||| || || ||||||| | || ||| || || Sbjct 514 GCCATGGTCCTTGAGCTGTTTGGGCAGGACGTGGCGCTTGGCGATCTCGAGCTTTTCATC 573 Query 353 TTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||||| || | | || || |||||||| |||||||| Sbjct 574 TTCGGTGTAGCCAGCGATACGGATGACTTCCATACGGTCCAG 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158379032960