Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001688.1
Length=394
Score E
Sequences producing significant alignments: (Bits) Value
seq701 426 4e-117
seq495 118 2e-24
>seq701
Length=2661
Score = 426 bits (472), Expect = 4e-117
Identities = 331/394 (84%), Gaps = 0/394 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| |||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 1830 CGATGGTCAGCAGCTCGCCGCCCACCTGGGTCCACGCCAGGCCGGTTACCTGCCCTACCT 1889
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
| ||||||||||||||||||||||||| ||| ||||| ||||| ||| | ||||| |||
Sbjct 1890 GGTCCTGCTGCTCGGCCAGGCCGTAGCGGAACTTGCGAACGCCCAGGTAATGCTCGAGGT 1949
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180
||| | |||||| || | | | || | |||||||||||||| ||||||
Sbjct 1950 TGTCACCATCGACCTTGACGGCCACCTGCTTGAGCCCGGCATGTTCCTTGACGACCTTGC 2009
Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2010 GGCAGATCTTGGCGATCTGGCGCTCCAGGCCCCGCACACCGGCTTCGCGGGTGTAGTAGC 2069
Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300
||| |||||||||||| | | | || | || | |||||||||||||||||| ||||
Sbjct 2070 GGATGATGTCGCGGATGGCGGCAGTGTCGATCTCCAGCTCGCCCTTCTTCAGGCCGTTGG 2129
Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360
|| ||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 2130 CCTTGATCTGCTTGGGCGAGAGGTACTTGACCGCAATGTTGATCTTCTCGTCTTCGGTGT 2189
Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
| |||||||| |||||||||||||||||||| ||
Sbjct 2190 ACCCCGGCAGACGAATCACTTCCATCCGGTCGAG 2223
>seq495
Length=4016
Score = 118 bits (130), Expect = 2e-24
Identities = 272/402 (68%), Gaps = 16/402 (4%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGA--CCGAC 58
|||||||||| | |||||||| | || |||||| |||||||| |||| ||| |||||
Sbjct 222 CGATGGTCAGGATGTCGCCGCCGAACTCGGTCCAGGCCAGGCCGGTGA--TGATCCCGAC 279
Query 59 TTGATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAG 118
||||||| || || | | |||||||| | | || || ||||| | | | ||||
Sbjct 280 CTGATCCTCCTCGTCCGTCTCGCCGTAGCGGTACTTCCGAACGCCCGCGTACTTGGCCAG 339
Query 119 GGAGTCGGCCGTGACCTTCACCGAGAAG-CGTTTTTCCAGCGCATGTTCCTTGACCGCCT 177
||| | ||| | | |||| | | || ||| | ||| | | |||||||
Sbjct 340 CCGCTCGTCGTCGACGGTGATCGAGGCGGCCTTGGTCCTGGCCATCTCGCGC-ACCGCCT 398
Query 178 TGCGGC--AGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTA 235
||||| || | | || | |||||| || || || |||||||| ||||||||
Sbjct 399 TGCGGGCTAGGCCGCCCAGAGC--GCGCTCGAGCGAGCGGACGCCGGCTTCCCGGGTGTA 456
Query 236 GTAGCGGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATC---TCGCCCTTCTTCAG 292
|||||||| | ||||| ||||| || | | ||||| ||||| | ||||||
Sbjct 457 GTAGCGGATCAGATCGCGAATCGTCTCGTCCGGGA---CGATCAGCTCGCCTTCCTTCAG 513
Query 293 GCCATTGGCCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTC 352
||||| | || | ||| |||||| || || ||||||| | || ||| || ||
Sbjct 514 GCCATGGTCCTTGAGCTGTTTGGGCAGGACGTGGCGCTTGGCGATCTCGAGCTTTTCATC 573
Query 353 TTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
||||||||| || | | || || |||||||| ||||||||
Sbjct 574 TTCGGTGTAGCCAGCGATACGGATGACTTCCATACGGTCCAG 615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158379032960
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