Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq365 372 7e-101
seq1739 199 9e-49
seq583 185 2e-44
seq412 176 1e-41
seq555 100 7e-19
>seq365
Length=5917
Score = 372 bits (412), Expect = 7e-101
Identities = 337/429 (79%), Gaps = 30/429 (7%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||||
Sbjct 349 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 408
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
||||||||||||| ||| ||||||| ||| |||||||| |||||||||||||||
Sbjct 409 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 468
Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180
|||||||||||| | ||||| || |||| | || ||||||| |||||||
Sbjct 469 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 528
Query 181 GCTCCCCTACCCAACCACACAGGT----------------------------TGCCACAG 212
|||| |||||||| ||| || | | |||||||
Sbjct 529 GCTCTCCTACCCATCCATACGGCTGAACCACGAAGGCTTGCCTCAGTACGAATGCCACAA 588
Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGC 272
|||||| || ||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 589 CTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAGC 648
Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332
|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||
Sbjct 649 TATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCACAGCAAC 708
Query 333 TCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391
|||||||||||| ||||| || ||| | ||| ||| |||||| || ||||||||| ||||
Sbjct 709 TCCACATCCTTTTCCACTTAG-CACGCGCTTTGGGACCTTAGTTGGTGATCTGGGTTGTT 767
Query 392 TCCCTCTCG 400
|||||||||
Sbjct 768 TCCCTCTCG 776
>seq1739
Length=589
Score = 199 bits (220), Expect = 9e-49
Identities = 216/293 (74%), Gaps = 29/293 (10%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||||
Sbjct 297 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 356
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
||||||||||||| ||| ||||||| ||| |||||||| |||||||||||||||
Sbjct 357 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 416
Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180
|||||||||||| | ||||| || |||| | || ||||||| |||||||
Sbjct 417 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 476
Query 181 GCTCCCCTACCCA-------------ACCACACAGG----------------TTGCCACA 211
|||| |||||||| ||||| ||| |||||||
Sbjct 477 GCTCTCCTACCCATCAACACGGCTGGACCACGAAGGCCTACCAATAATGTCAATGCCACA 536
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGAC 264
|||||| || ||| ||||||| |||||| ||||||||||||||||||||
Sbjct 537 ACTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGAC 589
>seq583
Length=3271
Score = 185 bits (204), Expect = 2e-44
Identities = 291/406 (72%), Gaps = 13/406 (3%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59
||||||||||| |||||||||||||||| ||||||||||| | || || ||| |||
Sbjct 134 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 193
Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118
| |||| |||||| |||||| |||| || |||||| | || |||||||| |
Sbjct 194 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 253
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| |||| | | ||||| || || || | || ||||| | || ||
Sbjct 254 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 312
Query 178 GACGCTCCCCTACCCAACC--ACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAG 231
||||||| ||||| | ||| || | ||| |||||||| |||| |
Sbjct 313 AACGCTCCTCTACCGCGCATAACAAAGTTATGCACCCCAAGCTTCGGTTTTGTGCTTA-G 371
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| || || || ||| || ||| ||||||||||||||||||| ||||| |||
Sbjct 372 CCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAG 431
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| ||||||||||||||| ||||| || ||||||| ||| |||||
Sbjct 432 GGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTT 491
Query 352 AGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|| ||| | || ||| ||||||||| | |||||| |||||||||
Sbjct 492 AG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 536
>seq412
Length=5103
Score = 176 bits (194), Expect = 1e-41
Identities = 289/406 (71%), Gaps = 13/406 (3%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59
|||||||| || ||| |||||||||||| ||||||||||| | || || ||| |||
Sbjct 1801 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 1860
Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118
| |||| |||||| |||||| |||| || |||||| | || |||||||| |
Sbjct 1861 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 1920
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
|||||| |||| | | ||||| || || || | || ||||| | || ||
Sbjct 1921 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 1979
Query 178 GACGCTCCCCTACCCAACC--ACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAG 231
||||||| ||||| | ||| || | ||| |||||||| |||| |
Sbjct 1980 AACGCTCCTCTACCGCGCATAACAAAGTTATGCACCCCAAGCTTCGGTTTTGTGCTTA-G 2038
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| || || || ||| || ||| ||||||||||||||||||| ||||| |||
Sbjct 2039 CCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAG 2098
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| ||||||||||||||| ||||| || ||||||| ||| |||||
Sbjct 2099 GGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTT 2158
Query 352 AGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
|| ||| | || ||| ||||||||| | |||||| |||||||||
Sbjct 2159 AG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 2203
Score = 134 bits (148), Expect = 3e-29
Identities = 132/168 (79%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289
||||||| || || || ||| || ||| ||||||||||||||||||| ||||| |
Sbjct 2549 AGCCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 2608
Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349
||| |||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||
Sbjct 2609 AGGGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCAC 2668
Query 350 TGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
| || ||| | || ||| ||||||||| | |||||| |||||||||
Sbjct 2669 TTAG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 2715
>seq555
Length=3447
Score = 100 bits (110), Expect = 7e-19
Identities = 113/149 (76%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 255 ATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACC 313
||| || ||| |||||||| ||||||||||||| || || |||||||||||||||||||
Sbjct 2459 ATCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACA 2518
Query 314 TCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTT 371
|||| | |||| |||| || | || | | ||| || | || ||| ||||
Sbjct 2519 TCCTAGCTGTCGGGGCAATCAAACCGCGTTAGTTCAACTTAGCATATATTTGGGGACCTT 2578
Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|||||||| |||||| | |||||||||||
Sbjct 2579 AGCTGATGGTCTGGGTTCTTTCCCTCTCG 2607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177578685440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |