Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq365 372 7e-101 seq1739 199 9e-49 seq583 185 2e-44 seq412 176 1e-41 seq555 100 7e-19 >seq365 Length=5917 Score = 372 bits (412), Expect = 7e-101 Identities = 337/429 (79%), Gaps = 30/429 (7%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| Sbjct 349 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 408 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 409 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 468 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | ||||| || |||| | || ||||||| ||||||| Sbjct 469 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 528 Query 181 GCTCCCCTACCCAACCACACAGGT----------------------------TGCCACAG 212 |||| |||||||| ||| || | | ||||||| Sbjct 529 GCTCTCCTACCCATCCATACGGCTGAACCACGAAGGCTTGCCTCAGTACGAATGCCACAA 588 Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGC 272 |||||| || ||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 589 CTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAGC 648 Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332 |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 649 TATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCACAGCAAC 708 Query 333 TCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 |||||||||||| ||||| || ||| | ||| ||| |||||| || ||||||||| |||| Sbjct 709 TCCACATCCTTTTCCACTTAG-CACGCGCTTTGGGACCTTAGTTGGTGATCTGGGTTGTT 767 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 768 TCCCTCTCG 776 >seq1739 Length=589 Score = 199 bits (220), Expect = 9e-49 Identities = 216/293 (74%), Gaps = 29/293 (10%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| Sbjct 297 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 356 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 357 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 416 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | ||||| || |||| | || ||||||| ||||||| Sbjct 417 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 476 Query 181 GCTCCCCTACCCA-------------ACCACACAGG----------------TTGCCACA 211 |||| |||||||| ||||| ||| ||||||| Sbjct 477 GCTCTCCTACCCATCAACACGGCTGGACCACGAAGGCCTACCAATAATGTCAATGCCACA 536 Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGAC 264 |||||| || ||| ||||||| |||||| |||||||||||||||||||| Sbjct 537 ACTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGAC 589 >seq583 Length=3271 Score = 185 bits (204), Expect = 2e-44 Identities = 291/406 (72%), Gaps = 13/406 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 ||||||||||| |||||||||||||||| ||||||||||| | || || ||| ||| Sbjct 134 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 193 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 194 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 253 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 254 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 312 Query 178 GACGCTCCCCTACCCAACC--ACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| || | ||| |||||||| |||| | Sbjct 313 AACGCTCCTCTACCGCGCATAACAAAGTTATGCACCCCAAGCTTCGGTTTTGTGCTTA-G 371 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| || || || ||| || ||| ||||||||||||||||||| ||||| ||| Sbjct 372 CCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAG 431 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||| Sbjct 432 GGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTT 491 Query 352 AGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || ||| | || ||| ||||||||| | |||||| ||||||||| Sbjct 492 AG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 536 >seq412 Length=5103 Score = 176 bits (194), Expect = 1e-41 Identities = 289/406 (71%), Gaps = 13/406 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 |||||||| || ||| |||||||||||| ||||||||||| | || || ||| ||| Sbjct 1801 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 1860 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 1861 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGTTTTTCACCCGCATTATCGTTACTCATGTC 1920 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 1921 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 1979 Query 178 GACGCTCCCCTACCCAACC--ACACAGGTTGCCAC----AGCTTCGGCGGATAACTTAAG 231 ||||||| ||||| | ||| || | ||| |||||||| |||| | Sbjct 1980 AACGCTCCTCTACCGCGCATAACAAAGTTATGCACCCCAAGCTTCGGTTTTGTGCTTA-G 2038 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| || || || ||| || ||| ||||||||||||||||||| ||||| ||| Sbjct 2039 CCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAG 2098 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||| Sbjct 2099 GGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTT 2158 Query 352 AGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 || ||| | || ||| ||||||||| | |||||| ||||||||| Sbjct 2159 AG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 2203 Score = 134 bits (148), Expect = 3e-29 Identities = 132/168 (79%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCA 289 ||||||| || || || ||| || ||| ||||||||||||||||||| ||||| | Sbjct 2549 AGCCCCGTTAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAA 2608 Query 290 AGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCAC 349 ||| |||||||||| ||||||||||||||| ||||| || ||||||| ||| |||| Sbjct 2609 AGGGTGGCTGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCAC 2668 Query 350 TGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || ||| | || ||| ||||||||| | |||||| ||||||||| Sbjct 2669 TTAG-CACAAAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 2715 >seq555 Length=3447 Score = 100 bits (110), Expect = 7e-19 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 255 ATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACC 313 ||| || ||| |||||||| ||||||||||||| || || ||||||||||||||||||| Sbjct 2459 ATCGCTCGACTAGTGAGCTGTTACGCACTCTTTAAATGAATGGCTGCTTCCAAGCCAACA 2518 Query 314 TCCTGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTT 371 |||| | |||| |||| || | || | | ||| || | || ||| |||| Sbjct 2519 TCCTAGCTGTCGGGGCAATCAAACCGCGTTAGTTCAACTTAGCATATATTTGGGGACCTT 2578 Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||||||| |||||| | ||||||||||| Sbjct 2579 AGCTGATGGTCTGGGTTCTTTCCCTCTCG 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177578685440