Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq583 214 1e-53 seq365 143 2e-32 seq400 104 2e-20 seq819 86.0 5e-15 seq1201 82.4 6e-14 >seq583 Length=3271 Score = 214 bits (236), Expect = 1e-53 Identities = 144/161 (89%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| | ||||||||||||| |||| ||||||||||||||||||||| Sbjct 2537 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGCTTTATGGGATTAGCTCCCCCTCGCG 2596 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 ||||||| |||| |||| ||||||||||||||||| ||||| ||| |||||||||| Sbjct 2597 GGTTGGCAACCCTTTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 2656 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||||||||||||||||||||||||| Sbjct 2657 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 2697 >seq365 Length=5917 Score = 143 bits (158), Expect = 2e-32 Identities = 123/152 (81%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| ||||||| ||| || ||||| ||||||| ||||| ||||||| Sbjct 2523 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGACTTTTTGGGATTCGCTCCACCTCGCG 2582 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||| ||||| |||||||| | | ||||||||| | |||||||| || Sbjct 2583 GTATCGCAGCCCTTTGTATCGGCCATTGTAGCATGCGTGAAGCCCAAGACATAAGGGGCA 2642 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| || ||||||||||||||||||||||||| Sbjct 2643 TGATGATTTGACGTCATCCCCACCTTCCTCCG 2674 >seq400 Length=5312 Score = 104 bits (114), Expect = 2e-20 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129 ||||||||| |||||||| ||||||| ||||| || |||||||||||||||||| Sbjct 1017 CCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCCTGTAAGGGCCATGAGGACTT 1076 Query 130 GACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||||||||||||| || Sbjct 1077 GACGTCATCCCCACCTTCCTCCGGCTT 1103 >seq819 Length=2095 Score = 86.0 bits (94), Expect = 5e-15 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 ||||||||||||| | ||||| ||| || |||| | |||| || | | || Sbjct 1743 TCGAGTTGCAGACCCCGATCCGAACTGTGAACGGCTTTTAGAGATTGGCATCATATTGCT 1684 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || |||| ||||| |||||||| ||||||| ||||| | ||||||||| Sbjct 1683 ATGTAGCTGCCCGCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 1624 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150 ||| ||||||||||| |||||||||||||| Sbjct 1623 TGATGACTTGACGTCGTCCCCACCTTCCTC 1594 >seq1201 Length=1307 Score = 82.4 bits (90), Expect = 6e-14 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||||||| |||| ||||||||||| ||||||| |||| Sbjct 1091 TCGAGTTGCAGACTCCAATCCGGACTGAGATAGGGTTTCTGGGATTGGCTCCCCGTCGCA 1150 Query 61 GGTTGGCGGCCCT 73 |||| ||| |||| Sbjct 1151 GGTTCGCGTCCCT 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415992705700