Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014
-09-26] 1,810 sequences; 42,486,966 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq583 214 1e-53
seq365 143 2e-32
seq400 104 2e-20
seq819 86.0 5e-15
seq1201 82.4 6e-14
>seq583
Length=3271
Score = 214 bits (236), Expect = 1e-53
Identities = 144/161 (89%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||||| | ||||||||||||| |||| |||||||||||||||||||||
Sbjct 2537 TCGAGTTGCAGACTGCGATCCGGACTACGACTGGCTTTATGGGATTAGCTCCCCCTCGCG 2596
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
||||||| |||| |||| ||||||||||||||||| ||||| ||| ||||||||||
Sbjct 2597 GGTTGGCAACCCTTTGTACCAGCCATTGTATGACGTGTGTAGCCCCACCTATAAGGGCCA 2656
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2657 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 2697
>seq365
Length=5917
Score = 143 bits (158), Expect = 2e-32
Identities = 123/152 (81%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
||||||||||||| ||||||| ||| || ||||| ||||||| ||||| |||||||
Sbjct 2523 TCGAGTTGCAGACCCCAATCCGAACTGAGACCGACTTTTTGGGATTCGCTCCACCTCGCG 2582
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || ||||| ||||| |||||||| | | ||||||||| | |||||||| ||
Sbjct 2583 GTATCGCAGCCCTTTGTATCGGCCATTGTAGCATGCGTGAAGCCCAAGACATAAGGGGCA 2642
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152
||| || |||||||||||||||||||||||||
Sbjct 2643 TGATGATTTGACGTCATCCCCACCTTCCTCCG 2674
>seq400
Length=5312
Score = 104 bits (114), Expect = 2e-20
Identities = 75/87 (86%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 70 CCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTT 129
||||||||| |||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 1017 CCCTCTGTAGTCGCCATTGTAGCACGTGTGTAGCCCACCCTGTAAGGGCCATGAGGACTT 1076
Query 130 GACGTCATCCCCACCTTCCTCCGGTTT 156
|||||||||||||||||||||||| ||
Sbjct 1077 GACGTCATCCCCACCTTCCTCCGGCTT 1103
>seq819
Length=2095
Score = 86.0 bits (94), Expect = 5e-15
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
||||||||||||| | ||||| ||| || |||| | |||| || | | ||
Sbjct 1743 TCGAGTTGCAGACCCCGATCCGAACTGTGAACGGCTTTTAGAGATTGGCATCATATTGCT 1684
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| || |||| ||||| |||||||| ||||||| ||||| | |||||||||
Sbjct 1683 ATGTAGCTGCCCGCTGTACCATCCATTGTAGCACGTGTGTAGCCCCGGACGTAAGGGCCA 1624
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTC 150
||| ||||||||||| ||||||||||||||
Sbjct 1623 TGATGACTTGACGTCGTCCCCACCTTCCTC 1594
>seq1201
Length=1307
Score = 82.4 bits (90), Expect = 6e-14
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||||||| ||||||||||| |||| ||||||||||| ||||||| ||||
Sbjct 1091 TCGAGTTGCAGACTCCAATCCGGACTGAGATAGGGTTTCTGGGATTGGCTCCCCGTCGCA 1150
Query 61 GGTTGGCGGCCCT 73
|||| ||| ||||
Sbjct 1151 GGTTCGCGTCCCT 1163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415992705700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |