Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parastrongyloides_20trichosuri_20[genbank_20GCA_5F000941615.1_202014 -09-26] 1,810 sequences; 42,486,966 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq400 253 3e-65 seq365 253 3e-65 seq819 149 1e-33 seq583 105 1e-20 seq902 87.8 3e-15 seq1775 73.4 7e-11 >seq400 Length=5312 Score = 253 bits (280), Expect = 3e-65 Identities = 230/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||||||||||||||||| | |||| | |||||||||||||||||| Sbjct 1495 CCCACGCTTTCGCGCCTCAGCGTCAGTAATGAGCCAGTATGTCGCCTTCGCCACTGGTGT 1554 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || |||| ||||||||| |||||||| |||||| |||| |||| | |||||| || Sbjct 1555 TCTTCCGAATATCTACGAATTTCACCTCTACACTCGGAGTTCCACATACCTCTCTCATAC 1614 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| |||| ||||| |||| ||||||||||| | |||||| ||||||| Sbjct 1615 TCAAGATCGCCAGTATCAAAGGCAGTTCCAGGGTTGAGCCCTGGGATTTCACCTCTGACT 1674 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| |||||||||| |||| ||| |||| |||||| ||| ||| || Sbjct 1675 TAACGATCCGCCTACGCGCCCTTTACGCCCAGTAATTCCGAGCAACGCTAGCCCCCTTCG 1734 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| ||||| ||| | |||| Sbjct 1735 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTCTCCGGGTA 1784 >seq365 Length=5917 Score = 253 bits (280), Expect = 3e-65 Identities = 230/290 (79%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| |||||||||||||||| | |||| ||| |||||||||| ||||| Sbjct 3074 CCCATGCTTTCGCTCCTCAGCGTCAGTTACGGCCCAGAGATCTGCCTTCGCCATCGGTGT 3133 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| |||||| |||||||||||||||||| |||||||| || || || | |||| Sbjct 3134 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAATCTCCCCTACCGCAC 3193 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || | || | | ||||||| ||||||||| ||||||||| | ||| Sbjct 3194 TCTAGCTTGCCCGTACCCACTGCAGGCCCGAGGTTGAGCCTCGGGTTTTCACAGCAGACG 3253 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| || |||||| |||||||| |||||| ||||||||| |||||| Sbjct 3254 CGACAAGCCGCCTACGAGCTCTTTACGCCCAATAATTCCGGACAACGCTTGCACCCTACG 3313 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||| |||| ||| |||||| Sbjct 3314 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTTTTCTGCAGGTA 3363 >seq819 Length=2095 Score = 149 bits (164), Expect = 1e-33 Identities = 214/296 (72%), Gaps = 12/296 (4%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || ||||||||| | | || | | |||||||| | ||||| Sbjct 793 CCCACGCTTTCGTGCATCAGCGTCAATAATAACTTAGTGAGCTGCCTTCGCAATCGGTGT 734 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGC-- 118 || ||||||| ||||||||||||||| |||||| || || || Sbjct 733 TCTAAGACATATCTATGCATTTCACCGCTACTTGTCTTATTCCGC---CCACTTCAAATA 677 Query 119 -ACTCAAGAAAAACAGTTTCAAATGCAG-GCTATGGGTTGAGC--CCATAGTTTTCACAT 174 | ||||| ||||| ||||| ||| || | | || ||| || | |||||| Sbjct 676 GATTCAAGTCCTACAGTATCAAAGGCACTGCGACAG-TTAAGCTGCCGTC--TTTCACCA 620 Query 175 CTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCA 234 ||||||| |||||||| | ||||||| ||||||||||||||||||||||||| Sbjct 619 CTGACTTATAGGGCCGCCTACGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGGAT 560 Query 235 CCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| Sbjct 559 CCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCTTATTCTTCAGGTA 504 >seq583 Length=3271 Score = 105 bits (116), Expect = 1e-20 Identities = 85/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||||| |||||| |||||||||| ||||| Sbjct 3079 CCCACGCTTTCGTGCATGAGCGTCAGTACAGGTCCAGGGGATTGCCTTCGCCATCGGTGT 3138 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC 103 ||||||| ||||||||||||||||| ||||||| ||||||||| Sbjct 3139 TCCTCCGCATATCTACGCATTTCACTGCTACACGCGGAATTCC 3181 >seq902 Length=1850 Score = 87.8 bits (96), Expect = 3e-15 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 218 CCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCT 277 |||||||||||||| ||| |||||||||||||||||||||||| ||||||||| || Sbjct 1 CCGGATAACGCTTGGATCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATCCT 60 Query 278 TATTCCTCAGGTA 290 ||||||| |||| Sbjct 61 TATTCCTTCGGTA 73 >seq1775 Length=549 Score = 73.4 bits (80), Expect = 7e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 228 CTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||| ||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 549 CTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGGTGCTTATTC 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828785467510